Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04217 and BL00359

See Amino acid alignment / Visit BSNT_04217 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence dna-align/BSNT_04217___lrgA.1.5803.seq
#    -bsequence dna-align/BL00359___lrgA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04217___lrgA-BL00359___lrgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04217___lrgA-BL00359___lrgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04217___lrgA
# 2: BL00359___lrgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 466
# Identity:     294/466 (63.1%)
# Similarity:   294/466 (63.1%)
# Gaps:          77/466 (16.5%)
# Score: 956.5
# 
#
#=======================================

BSNT_04217___      1 ATGAGTGCTAAAAAAGTGTACGGGTTTTTAACACAAGCATTTATTTTTGC     50
                     ||||..|.||||||||..|||||.||||||||.||.||||||||||||||
BL00359___lrg      1 ATGAAGGGTAAAAAAGAATACGGCTTTTTAACTCAGGCATTTATTTTTGC     50

BSNT_04217___     51 CGTCATTATGCTGGTTTCAAATATGATTGCCGCTATTGTCCCAATACCTA    100
                     .||.||.|||.|..|||||||....||.|||||..||.|.||.||.||.|
BL00359___lrg     51 TGTTATGATGTTTATTTCAAACGGAATCGCCGCGGTTCTGCCCATCCCGA    100

BSNT_04217___    101 TCCCGGCATCGGTTGTAGGGTTGGTCTTATTATTT-CTCCTAT---TATG    146
                     |.||..||||.||..|.||.|||||..|.||.||| |    ||   |.||
BL00359___lrg    101 TTCCTCCATCTGTCATCGGTTTGGTGCTGTTGTTTGC----ATTGCTGTG    146

BSNT_04217___    147 TTTGAAAGTCATTAAACTGGAACAAGTGGAAACGCTCGGAACGTCTTTAA    196
                     |..||||||..|.||.||.||||||||.|||.|||||||.|||.|..|.|
BL00359___lrg    147 TACGAAAGTGCTGAAGCTTGAACAAGTTGAATCGCTCGGCACGGCGCTCA    196

BSNT_04217___    197 CCTCTCTGATCGGATTTTTATTTGTTCCGTCAGGTATATCTGTTATGAAT    246
                     |.||.||||||||.|||||.||.||||||||.||.|||||.||.||||||
BL00359___lrg    197 CTTCGCTGATCGGCTTTTTGTTCGTTCCGTCGGGAATATCAGTGATGAAT    246

BSNT_04217___    247 TCGCTTGGTGTGATGCAGCAATACGGCCTGCAAATTGTTCTTGTCATTCT    296
                     |||||.||.||.|||.||.|||||||..|||..||.||.||.||.|||.|
BL00359___lrg    247 TCGCTCGGCGTCATGGAGAAATACGGATTGCCGATCGTCCTCGTGATTTT    296

BSNT_04217___    297 GCTCGCAACGATTATTCTGCTGGGGGCTACGGGATTGTTTTCTCAGCTGA    346
                     .||.||.||..|.||||||||.|..||.||.|||||||||||.|||.|.|
BL00359___lrg    297 CCTGGCCACCGTCATTCTGCTTGCAGCGACAGGATTGTTTTCACAGTTCA    346

BSNT_04217___    347 TTCTGTCGCTGAGCGGAAAACGCAAA--ACCG-CAGCGGACA-------T    386
                     |||||||..|   |||.||    |||  |||| ||  .||||       |
BL00359___lrg    347 TTCTGTCTGT---CGGCAA----AAAGGACCGTCA--AGACACACGAGTT    387

BSNT_04217___    387 GAA------AACAAAAACAG-----TGCAAAGCCCGCAGAACAATAACGA    425
                     |||      || ||||||||     ||.                      
BL00359___lrg    388 GAACCAGCCAA-AAAAACAGCATCTTGA----------------------    414

BSNT_04217___    426 ACTCGTTCACCATTAA    441
                                     
BL00359___lrg    414 ----------------    414


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