Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04248 and BL00395
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04248___phoR.1.5803.seq
# -bsequence dna-align/BL00395___phoR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04248___phoR-BL00395___phoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04248___phoR-BL00395___phoR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04248___phoR
# 2: BL00395___phoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1916
# Identity: 1178/1916 (61.5%)
# Similarity: 1178/1916 (61.5%)
# Gaps: 346/1916 (18.1%)
# Score: 3303.5
#
#
#=======================================
BSNT_04248___ 1 ATGAATAAATACCGTGTGCGCCTTTTTTCTGTATTCGTTGTCTG-----T 45
||||.|||||.|||....||.|||||..||| |..|| ||| |
BL00395___pho 1 ATGATTAAATTCCGGACCCGGCTTTTAGCTG----CCCTG-CTGACGCTT 45
BSNT_04248___ 46 ATGATTCTGGTGTTTTGTGTTCTCGGGCTGTTTT-------TACAGCAGC 88
.|||||||.||.|||..|...|||| ||||| |.|| |
BL00395___pho 46 TTGATTCTCGTATTTGCTTCACTCG----GTTTTCTGCTCGTTCA----C 87
BSNT_04248___ 89 TT-TTTGAAACATCT---GAT--CAAA--GGAAAGCAGAGGAACACATTG 130
|| |||.|..|.||| ||| |||| | ||||| .||.||||
BL00395___pho 88 TTGTTTCACTCCTCTTACGATGCCAAACTG---AGCAG----CCATATTG 130
BSNT_04248___ 131 AAAAAGAAGCAAAATAC---TTGGCTTCGCTTC-TTG----ATGCCGGCA 172
|||||||.|| | |||| ||||||| ||| |||..|..|
BL00395___pho 131 AAAAAGAGGC------CGCTTTGG--TCGCTTCATTGGCAAATGGTGAAA 172
BSNT_04248___ 173 ATCTGAA-TAATC-AAGCAAATGAGAAAATCATTAAAG-ATGCAGGCGGC 219
|..|||| |..|| .||| ||.|||..|.| |||.|| |.|||.||.|.
BL00395___pho 173 ACATGAAGTCTTCGGAGC-AAGGAGCTATT--TTAGAGAAGGCAAGCCGT 219
BSNT_04248___ 220 GCGCTTGA------TGTGAGCGCATCCGTTATCGATACAGACGGTAAGGT 263
|..||.|| ||| |||..||||.||||||.|.|||.||||
BL00395___pho 220 GAACTGGACAGTCGTGT------ATCGCTTATTGATACAAAAGGTCAGGT 263
BSNT_04248___ 264 GCTGTAT--------GGGTCAAACGGGAGATCGGCTGATTCC-----CAA 300
.||.|.| |||.|...|.|.|||.| |.||| |||
BL00395___pho 264 TCTTTTTCATTTTGGGGGCCGCGCCGAAGAGC-----AATCCGTTATCAA 308
BSNT_04248___ 301 AAGGTGCAGGCGCTTG-------TTT---CTGGCCATGAGG-GTATTCTG 339
|.|.||||||| ||| |.|...|.|||| |..|||.|
BL00395___pho 309 -----GGAAGCGCTTGAGTCGGATTTAAACGGTGAAGGAGGAGGCTTCAG 353
BSNT_04248___ 340 --TCAACAACAGATAACAAG---CTTTA---TTACGGACTTTCA----CT 377
||||| .|.|||.||.|| .|||| ||||| |.|| ||
BL00395___pho 354 GATCAAC-CCTGATGACGAGTCCGTTTACCGTTACG----TGCAGCCGCT 398
BSNT_04248___ 378 TA-----GAAGCGAAGGTGAAAAAACAGGATATGTGCTGCTTTCCGC-CT 421
.| ||.|.|||.||||| .||||||.|.||| .||.|| ||
BL00395___pho 399 CAAAGATGACGGGAATGTGAA-----TGGATATATTCTG--ATCAGCACT 441
BSNT_04248___ 422 C------------TGAAAAAAGCGACGGC--TTAAAAGGCGAAT-TGTGG 456
| ||.|| |||..| |.||||| || |
BL00395___pho 442 CCTGTCGATTCATTGCAA-----GACATCAATCAAAAG----ATCT---- 478
BSNT_04248___ 457 GGGATGCT-GACGGC--CAGTCTTTGTACCGCATTTATCGTCATTGTTTA 503
||||.|| ..|||| .||.|||.|.||.||.|||.|..||||.|
BL00395___pho 479 -GGATTCTCCTCGGCGTGAGCCTTGGAACGGCCTTTTTAATCATCG---- 523
BSNT_04248___ 504 TTTTTATTCC------------AGCATGACCTCACGTTATAAAAGGTCAA 541
|| ||.||.|||||.|..||||..|...|.|
BL00395___pho 524 --------CCGGGCTTGGGGCGAGAATAACCTCTCAATATACGAATCCGA 565
BSNT_04248___ 542 TTGAGTCAGCGACAAATGTAGCCACAGAACTCTCTAAGGGCAACTACGAT 591
|||||||.||||||.|.||.||.|..||.||..|.||.||.|||||..|.
BL00395___pho 566 TTGAGTCTGCGACACAAGTGGCGATTGAGCTTGCCAAAGGAAACTATAAA 615
BSNT_04248___ 592 GCACGGACGTACGGCGGCTATATTAGGCG-TTCTGATAAGCTAGGACAT- 639
|||.|.||.|.|..|| .|.||.|..|| |.||| |||.||..|||
BL00395___pho 616 GCAAGAACATTCAACG--AAGATGAAACGATGCTG---AGCCAGTCCATC 660
BSNT_04248___ 640 ---------GCGATGAACAGCCTTGCCATTGATCTGATGGAAATGACGCG 680
|||..|||| |||..|||.|||||..|
BL00395___pho 661 AATATGCTGGCGCAGAAC---------------CTGCAGGACATGACAAG 695
BSNT_04248___ 681 AACGCAGGAAATGCAGCGGGATCGGCTGCTGACAGTCATTGAAAACATTG 730
|.|.||||||||||||||.||.||.||||..||.|||||.|||||.||.|
BL00395___pho 696 AGCCCAGGAAATGCAGCGCGACCGTCTGCAAACCGTCATCGAAAATATCG 745
BSNT_04248___ 731 GCTCCGGGCTGATTATGATCGACGGAAGAGGCTT-TATTAATCTCGTAAA 779
..|||||.|||||..|.|||||||||| |||.|| ||||.|.||.||.||
BL00395___pho 746 ATTCCGGTCTGATCTTAATCGACGGAA-AGGGTTATATTCACCTTGTGAA 794
BSNT_04248___ 780 CAGGTCTTACGCCAAGCAGTTTCA--TATCAATCCGAATCATATGCTGCG 827
|.|..||||....|||||.||||| || .||.||| ||||..|.||...
BL00395___pho 795 CCGCGCTTATCAAAAGCAATTTCACGTA-GAAGCCG-ATCAGCTTCTTTA 842
BSNT_04248___ 828 CCGTCTTTATCACGA--TGCATTTGAACATGAAGAAGTGATCCAGCTTGT 875
||.|.|.|||||||| ||| |.|||||.|||||..|.||..|.||..|
BL00395___pho 843 CCATTTCTATCACGAAGTGC--TCGAACACGAAGAGATCATTAATCTCAT 890
BSNT_04248___ 876 CGAAGACATTTTTATGACGGAGACAAAGAAATGCAAGCTGTTAAGACTAC 925
.|||||.||||||||||||||..|||||....||||..||||.|.|||.|
BL00395___pho 891 TGAAGAAATTTTTATGACGGAAGCAAAGGTCCGCAAAATGTTTAAACTGC 940
BSNT_04248___ 926 CGATCAAAATAGAACGGCGTTATTTTGAAGTGGACGGTGTTCCGATTATG 975
||||||||||.|||.|..|.|||||||||||.|||||.|||||||||||
BL00395___pho 941 CGATCAAAATTGAAAGAAGGTATTTTGAAGTCGACGGGGTTCCGATTAT- 989
BSNT_04248___ 976 GGGCCGG-----ACGATGAATGGAAAGGAATTGTGCTTGTTTTCCATGAC 1020
||| |.|||||.||||||||.||.||.||.||||||||||||
BL00395___pho 990 ----CGGCATCAATGATGAGTGGAAAGGCATCGTTCTCGTTTTCCATGAC 1035
BSNT_04248___ 1021 ATGACGGAAACAAAGAAATTAGAGCAGATGAGGAAGGATTTTGTGGCCAA 1070
||||||||||.||||.|..|.||..|.|||||||||||.|||||.|||||
BL00395___pho 1036 ATGACGGAAAGAAAGCAGCTTGAAGAAATGAGGAAGGACTTTGTCGCCAA 1085
BSNT_04248___ 1071 TGTTTCTCATGAGCTGAAAACGCCGATTACGTCCATAAAAGGGTTTACGG 1120
|||.||.|||||||||||||||||||||||.||.||.||||||||.||.|
BL00395___pho 1086 TGTCTCCCATGAGCTGAAAACGCCGATTACATCAATCAAAGGGTTCACCG 1135
BSNT_04248___ 1121 AGACGTTATTGGACGGGGCGATGGAGGATAAAGAGGCGCTTTCTG-AATT 1169
|.|||.|..|||||||.||||||.|.||....|||.||||.| || |.||
BL00395___pho 1136 AAACGCTTCTGGACGGAGCGATGAACGAACGGGAGACGCTGT-TGCAGTT 1184
BSNT_04248___ 1170 TCTCTCTATTATTCTTAAGGAAAGCGAAAGGCTTCAGTCT-------TTG 1212
|||.||.||.| ||||| ||||.|| ||..|.|||| |||
BL00395___pho 1185 TCTATCGATCA-TCTTA---AAAGAGA---GCAGCCGTCTGCAAACCTTG 1227
BSNT_04248___ 1213 GTTCAGGATTTGCTCGATCTCTCAAAAATCGAGCAGCAAAATTTCACGCT 1262
.|.|||||..||.|.|||||.||.||||||||.||||||||.|||||.||
BL00395___pho 1228 ATCCAGGACCTGTTGGATCTGTCGAAAATCGAACAGCAAAACTTCACCCT 1277
BSNT_04248___ 1263 CAGTA-TCGAAACGTTTGAGCCGGCCA---------AAATGCTTGTTGAG 1302
.|.|| ||.||| ||| || ||||.||.|..||.
BL00395___pho 1278 GAATATTCAAAA---TTG-------CAATATCGGTGAAATCCTCGCCGAA 1317
BSNT_04248___ 1303 ATTGAAACGCTTCTGAAGCATAAGGCGGATGAGAAAGGCATCTCCTTG-C 1351
|||||.|.||||.|||||.||||.|||||.||.|||||.|||.||||| |
BL00395___pho 1318 ATTGAGATGCTTTTGAAGAATAAAGCGGAGGAAAAAGGAATCACCTTGAC 1367
BSNT_04248___ 1352 ACCTGAATGTCCCGAAA----GACCCTCAATATGTATCTGGTGACCCGTA 1397
||..|||...||.||.| |.||.| ||..||.||.||||||.|
BL00395___pho 1368 ACTGGAAAAGCCGGATAAGCCGGCCGT-----TGCTTCCGGAGACCCGCA 1412
BSNT_04248___ 1398 CAGGCTGAAACAGGTATTTCTTAATCTCGTAAACAATGCGTTAACCTACA 1447
|||.||.||.|||.|.|||.|.|||.|.||.|||||||||.|.||.||.|
BL00395___pho 1413 CAGACTAAAGCAGATCTTTTTGAATTTGGTGAACAATGCGCTCACATATA 1462
BSNT_04248___ 1448 CGCCTGAGGGGGGCTCCGTGGCTAT------CAATGT-----AAAGCCCA 1486
|||||||.|..||...||||.|.|| ..|||| ||....||
BL00395___pho 1463 CGCCTGAAGATGGAAGCGTGACGATTTCGGCTGATGTTCTGGAAGATGCA 1512
BSNT_04248___ 1487 GAGAAAAAGACATTCAGATTGAGGTTGCCGATTCTGGAATCGGAATTCAG 1536
|.|.| |.|||.|.||||| |||.|.||.|||||.||
BL00395___pho 1513 GTGCA------AGTCAAAGTGAGG-----GATACGGGCATCGGGAT---- 1547
BSNT_04248___ 1537 AAAGAA----GAAATTCCGCGCATCTTTGAACGCTTTTACCGCGTAGATA 1582
.|||.| |||||.|||.|.||.||||||||.||.|||.|..|.||||
BL00395___pho 1548 CAAGCAGTCCGAAATCCCGAGGATATTTGAACGGTTCTACAGGATCGATA 1597
BSNT_04248___ 1583 AAGACAGAAGCAGGAATTCGGGCGGAACTGGGCTGGGCCTTGCGATTGTC 1632
|||||||.|||||.|||||.||.|||||.||.||.||.||||||||.|||
BL00395___pho 1598 AAGACAGGAGCAGAAATTCAGGAGGAACCGGTCTCGGTCTTGCGATCGTC 1647
BSNT_04248___ 1633 AAGCATTTAATAGAGGCTCATGAAGGGAAAATTGATGTCACAAGCGAGCC 1682
|||||||||.|.||.||.||..||||..||||.||.|||..|||||||
BL00395___pho 1648 AAGCATTTAGTCGAAGCCCACCAAGGCGAAATCGACGTCGAAAGCGAG-- 1695
BSNT_04248___ 1683 TGGACGGGGAACTGTCTTTACCGTGACGCTGAA---ACGGGCCGCTGAAA 1729
|||||||..|.| ||| ||| ||||.|||||.|||
BL00395___pho 1696 ----CGGGGAAAAGGC---ACC--------GAATTCACGGTCCGCTTAAA 1730
BSNT_04248___ 1730 A-----GTCCGCCTAA 1740
| .||||..||.
BL00395___pho 1731 ACGCGCATCCGAGTAG 1746
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