Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04576 and BL00427

See Amino acid alignment / Visit BSNT_04576 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:44
# Commandline: needle
#    -asequence dna-align/BSNT_04576___yubD.1.5803.seq
#    -bsequence dna-align/BL00427___yubD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04576___yubD-BL00427___yubD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04576___yubD-BL00427___yubD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04576___yubD
# 2: BL00427___yubD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1978
# Identity:     907/1978 (45.9%)
# Similarity:   907/1978 (45.9%)
# Gaps:         797/1978 (40.3%)
# Score: 1593.0
# 
#
#=======================================

BSNT_04576___      1 ---------------------------------------------AT---      2
                                                                  ||   
BL00427___yub      1 ATGAGTCAATCTGATGTGGCGATCCCGAGCTCTAAAAAAATCGGCATTCC     50

BSNT_04576___      3 GAAGACAAAACACTATTGGGTGATTTCTTTGCTCGCCGTCTTAGCGGT-C     51
                     ||||         ||||.|.|.||||         |.||.|||.||.| |
BL00427___yub     51 GAAG---------TATTTGATCATTT---------CGGTTTTAACGATAC     82

BSNT_04576___     52 GGGCCGGGATTGATGTCTAACACGGC------ATTGTC------------     83
                     .||||   ||||           |||      |||.||            
BL00427___yub     83 TGGCC---ATTG-----------GGCCGCAATATTTTCTTAATCTTTCCT    118

BSNT_04576___     84 -----GTCAGTTCAAGGCCTTGTTCAGAAAGCGGTTGGAACAAGTGTCTT    128
                          .|||| |||||.|.|..||||.||.|              |.|||
BL00427___yub    119 ATACGCTCAG-TCAAGTCGTCATTCAAAACG--------------GACTT    153

BSNT_04576___    129 CA-----CATCAG----TA-----AATCCG---ATATTGATCGGC-AATA    160
                     ||     ||.|.|    ||     |.||||   ||.||||    | |||.
BL00427___yub    154 CATTTGTCACCGGACGATATGCGGATTCCGTCCATTTTGA----CAAATC    199

BSNT_04576___    161 TGGCCTTTGC-CTTGTTAGTTCCGGCAGGACCGCTGCT------GAGGAA    203
                     |.||.||||| ||.|.| ||||||...||||...|..|      ||||  
BL00427___yub    200 TTGCTTTTGCTCTCGGT-GTTCCGCTTGGACGTATATTTTCAAGGAGG--    246

BSNT_04576___    204 AAAATTCGG--TGCGCGTCCCGTCTATCTGGC-TTCATTACC-TGTCTTT    249
                         |||||  |.|| |..|.| |||.|||.| .||||.||| |.|.|||
BL00427___yub    247 ----TTCGGCATTCG-GAACAG-CTACCTGACACTCATCACCTTATTTTT    290

BSNT_04576___    250 ATACTAGGCTCACTGCTCATCGCATGTTCAGGCGATATTGCATGGATGGC    299
                     ||.|  |||||.|||.||..|||||.||||                    
BL00427___yub    291 ATGC--GGCTCGCTGATCGACGCATTTTCA--------------------    318

BSNT_04576___    300 GGCAGG-------GCGCTTTTTACAGG--GGGCGGCA-ACAGGCGTCATG    339
                      |||||       .|||||.|||..||  |||.|  | |||.|..|.|||
BL00427___yub    319 -GCAGGCTTGTTTTCGCTTCTTATCGGAAGGGTG--ATACAAGGATTATG    365

BSNT_04576___    340 CT----GATGATTAT-------GATTCCAATGCTTGTACTGTC--ATTCC    376
                     ||    .||| ||||       |||||        .|.|||||  |||  
BL00427___yub    366 CTCCGGAATG-TTATTTTTGACGATTC--------TTCCTGTCAAATT--    404

BSNT_04576___    377 CGATT--------GAACGCAGGAACTATGCA--CTGCTTGTGCTGATCG-    415
                      ||||        |||| .|||   |..|||  .||.||.||.|..||| 
BL00427___yub    405 -GATTTCGTTTCCGAAC-AAGG---TCCGCAATTTGTTTTTGTTTTTCGT    449

BSNT_04576___    416 -----GGGGATTCTATGG---TTCTGTTATCATCGGCACAATCCTCGGAA    457
                          |.|||||.|..||   |||||   .||||||..|..|..|.||..
BL00427___yub    450 CATTAGCGGATTGTTCGGCGCTTCTG---CCATCGGAGCGGTTTTTGGTT    496

BSNT_04576___    458 CCATTGCAACAAGCTGCGG--GCATTGGAGATGGCTGTTTTTCAT-----    500
                     ||.|..||...||| ||||  ||| |||.|.|||.|||||.| ||     
BL00427___yub    497 CCCTGTCACTCAGC-GCGGATGCA-TGGCGCTGGGTGTTTAT-ATTAAAT    543

BSNT_04576___    501 ---------------CTTTGGCACCTTGTCCCTGATCGGTGTCGCGGTGA    535
                                    |||||   |||||    |||||||..||       
BL00427___yub    544 ATTTGTTCGCCTGTCCTTTG---CCTTG----TGATCGGCTTC-------    579

BSNT_04576___    536 GCTATTTCTTT-----------CTTC--ATGA---CGAGCATCACGGGGC    569
                        .|||||||           |..|  ||||   .||||||||      
BL00427___yub    580 ---TTTTCTTTGCCGAAACAAGCAGCGGATGAGCGGGAGCATCA------    620

BSNT_04576___    570 GTCG---GATCAAGAACAGCCGCTTGATCATGCGGAAATTCT--TTTATC    614
                     .|||   ||| ||| ||.|.||.||  |.||||      |||  ||..||
BL00427___yub    621 TTCGATTGAT-AAG-ACGGGCGTTT--TTATGC------TCTCATTGCTC    660

BSNT_04576___    615 -----TGTTTT--CCTTGCCGC--AGCCTCA----GC--------GGT-T    642
                          ||||||  |..||||||  |   |||    ||        ||| |
BL00427___yub    661 ATGGTTGTTTTGACGGTGCCGCTTA---TCAATTTGCAGAAGACGGGTGT    707

BSNT_04576___    643 TCATTCATTTTTCTGCAAAAATG-GGGGCTGTCATCGGGTTATGTATGGA    691
                     ||||||.||||         ||| |.|||.||..|    ||.||...|||
BL00427___yub    708 TCATTCTTTTT---------ATGTGTGGCCGTTCT----TTTTGGCCGGA    744

BSNT_04576___    692 T---TGGTTTCGGGGTGACGTTATGTTTGCTCATTGGTCTATTGA-TTG-    736
                     |   |..|||.||.||       |||||| ||||     ||..|| ||| 
BL00427___yub    745 TTCATCATTTTGGCGT-------TGTTTG-TCAT-----TACAGACTTGC    781

BSNT_04576___    737 ------TGGAATATAAAGTGAAAAACCCATTCATATCTATTAAACTGATG    780
                           .||||..|...|||     ||..|||.| ||      ||||   
BL00427___yub    782 GCGCCCGGGAACCTCTTGTG-----CCGTTTCGT-TC------ACTG---    816

BSNT_04576___    781 CTGCTGC-CAAAA----------------------CCGGTGCTTGGCTTA    807
                      ||.|.| |||||                      |||.|||||..|..|
BL00427___yub    817 -TGGTCCGCAAAAGCTGTTTCCGGGACAGTCATGGCCGTTGCTTCACACA    865

BSNT_04576___    808 TTG--ATCATAG------CTGCAGGGACGAT-AACGGTAGCTGTCAGCCT    848
                     |||  |||||.|      .|||.||   ||| |||||           .|
BL00427___yub    866 TTGCAATCATTGTTTCCCTTGCCGG---GATAAACGG-----------AT    901

BSNT_04576___    849 GTCTG-----CTTTTCA-AGGCTTGCTCCGTCAAATGTATGATATTTCTC    892
                     .|.||     |.||.|| |||||| ||          |.|||        
BL00427___yub    902 TTTTGGAAAACATTGCAGAGGCTT-CT----------TTTGA--------    932

BSNT_04576___    893 AGGAGCATCTCATTCTTTTACACTTGACTCTTTTAATCGGAG------TG    936
                       .|||||..||..|||||  |.|||..|.|||   |||.||      |.
BL00427___yub    933 --AAGCATGACACGCTTTT--ATTTGTGTTTTT---TCGCAGGGATTTTA    975

BSNT_04576___    937 GCGATCGCGGCCATTTTGAGCGCTCTGTTTTATGATAAAGTCGGACCAGG    986
                     ||.|   |.|||.|..|.|||.|.||.||.||||||.|..|.||..|.||
BL00427___yub    976 GCTA---CTGCCGTGCTCAGCACGCTTTTGTATGATCATTTTGGCGCCGG   1022

BSNT_04576___    987 GATGCTCGGTATTATCGGCGGACTCATTCTCGTCTTTGTGAATTTTCAAT   1036
                     ..|||||||...||||||||             |||||..|||..|||..
BL00427___yub   1023 ATTGCTCGGCTGTATCGGCG-------------CTTTGGAAATGATCATC   1059

BSNT_04576___   1037 GGCTGCAT---ATGCAGGATC-GATCATC-----------------TCTT   1065
                     |.|.|.||   |||.| |||| |.|||.|                 ||.|
BL00427___yub   1060 GTCGGTATGGAATGGA-GATCGGTTCAACCCGGTGTTTCGATGGAGTCGT   1108

BSNT_04576___   1066 TATATGTTCGCGGCACTGTTTATCATGCT-TGCAGCGGGAACAGGCCTGA   1114
                     |||||.|||..|   ||||||    |||| .|||||||            
BL00427___yub   1109 TATATCTTCATG---CTGTTT----TGCTGGGCAGCGG------------   1139

BSNT_04576___   1115 CAGTCG-CCGCAGGG--CTGAT---GGGAGCTGCCATGGG--AGGCCCGC   1156
                         || |.|||.||  .||.|   |||||| ||  ||||  .||  |||
BL00427___yub   1140 ----CGTCAGCATGGTATTGGTATCGGGAGC-GC--TGGGCACGG--CGC   1180

BSNT_04576___   1157 -TGCCTGATTTGGTCAAGAGAATGAC--AGCT-------GTTCAGTTT--   1194
                      ||||.|         |||.|.|.||  ||||       |.||.||||  
BL00427___yub   1181 TTGCCGG---------AGATATTCACCAAGCTTCAAAACGCTCGGTTTCG   1221

BSNT_04576___   1195 -TTAAGATTGTTTGTCTATATGG--GAGTTCCTATTC--------TCATC   1233
                      ||.|..||.|..| |.||.|.|  | ||.|||...|        |.|||
BL00427___yub   1222 CTTCACTTTATCCG-CAATTTCGCCG-GTGCCTGGGCTGCACCGGTGATC   1269

BSNT_04576___   1234 GGCTTTTTCACGAAAAAAGATGCTGCCA--GACAAAGCGGTTCGGTACAG   1281
                     ||||..||            ||||.|.|  .|.||.|||||.|..|||..
BL00427___yub   1270 GGCTGGTT------------TGCTTCAATGAAGAATGCGGTGCACTACGA   1307

BSNT_04576___   1282 GATTCTATGATGACTGCTTATCA-------TGATC-------TCTTCT--   1315
                     |||..||.||.||   |.|||||       |||||       ||..||  
BL00427___yub   1308 GATGATAAGAGGA---CATATCAGTGAAGCTGATCCTGAAATTCAGCTGG   1354

BSNT_04576___   1316 -----TCA------TTTC----TTTTATCCTTAGCG----TGCTGCTCGT   1346
                          |||      .|||    ||||.||...||||    |.|||.|.||
BL00427___yub   1355 AATTGTCAAAAATGATTCGTGATTTTGTCAGCAGCGGGCTTTCTGTTGGT   1404

BSNT_04576___   1347 ----------------CTGCCTGT--CATT-TTGTATGAATGCCACTGGA   1377
                                     |.||||.|  .||| |||.|  |||||||   ||
BL00427___yub   1405 GATGCGAAGAACATGGCGGCCTATACGATTGTTGCA--AATGCCA---GA   1449

BSNT_04576___   1378 ATGGGGCACAAGC---------TGGCACATAAACCAC---------ATGA   1409
                     |        ||||         ||||.|||  |.|||         |.||
BL00427___yub   1450 A--------AAGCTTCAGCCCTTGGCGCAT--ATCACGATTTGTTTACGA   1489

BSNT_04576___   1410 TA-----------AAGCGAAAACA-GCTTCGGAAAAACCGGCCGTTTCAG   1447
                     ||           ||||...|.|| ||||           ||.|.|||| 
BL00427___yub   1490 TACTGCTCTGGCTAAGCATCATCATGCTT-----------GCGGCTTCA-   1527

BSNT_04576___   1448 CAGAAGGTTTGTCG-AAGGCA---ACTGTCAAATCTTATAAAGTAATAAA   1493
                            .|||  | ||||||   ||.|                      
BL00427___yub   1528 -------ATTG--GAAAGGCAGCGACCG----------------------   1546

BSNT_04576___   1494 TGATACGGAATATCG--------TAA-----------TGC---AC---TC   1518
                      ||.|.||||.||||        .||           |||   ||   ||
BL00427___yub   1547 -GAAAAGGAAGATCGCTCGTTCAGAAGCGCCTTCGCCTGCCAGACCCTTC   1595

BSNT_04576___   1519 AG-AAATTTACAAAA----ATAG-----   1536
                     || ||.|..||||||    ||||     
BL00427___yub   1596 AGCAAGTCAACAAAAGGAGATAGGATAA   1623


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