Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04576 and BL00427

See DNA alignment / Visit BSNT_04576 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:43
# Commandline: needle
#    -asequence pep-align/BSNT_04576___yubD.1.5803.seq
#    -bsequence pep-align/BL00427___yubD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04576___yubD-BL00427___yubD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04576___yubD-BL00427___yubD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04576___yubD
# 2: BL00427___yubD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 582
# Identity:     148/582 (25.4%)
# Similarity:   243/582 (41.8%)
# Gaps:         113/582 (19.4%)
# Score: 601.5
# 
#
#=======================================

BSNT_04576___      1 -------------MKTKHYWVISLLAVLAVGPGLMSNTALSSVQGLVQKA     37
                                  :....|.:||:|.:||:||....|.:.:..|.::|..
BL00427___yub      1 MSQSDVAIPSSKKIGIPKYLIISVLTILAIGPQYFLNLSYTLSQVVIQNG     50

BSNT_04576___     38 VGTSVFTSVNPILIGNMAFALLVPAGPLLRKKFGARPVYLASLPVFILGS     87
                     :..|......|.::.|:||||.||.|.:..::||.|..||..:.:|:.||
BL00427___yub     51 LHLSPDDMRIPSILTNLAFALGVPLGRIFSRRFGIRNSYLTLITLFLCGS    100

BSNT_04576___     88 LLIACSGDIAWMAAGRFLQGAATGVMLMIMIPMLVLSFPIERRNYALLVL    137
                     |:.|.|..:..:..||.:||..:|::.:.::|:.::|||.:.||..|..:
BL00427___yub    101 LIDAFSAGLFSLLIGRVIQGLCSGMLFLTILPVKLISFPNKVRNLFLFFV    150

BSNT_04576___    138 IGGFYGSVIIGTILGTIATSCGHWRWLFFIFGTLSLIGVAVSYFFL----    183
                     |.|.:|:..||.:.|:::.|...|||:|.:.....::.:.:.:|.|    
BL00427___yub    151 ISGLFGASAIGAVFGSLSLSADAWRWVFILNICSPVLCLVIGFFSLPKQA    200

BSNT_04576___    184 --HDEHHGASDQEQPLDHAEILLSVFLAAASAVSFIFLQKWGLSSGYVWI    231
                       ..|||.       :|...:.:...|.....|..|.|||.|:.|.|||.
BL00427___yub    201 ADEREHHS-------IDKTGVFMLSLLMVVLTVPLINLQKTGVHSFYVWP    243

BSNT_04576___    232 GFGVTLCLLIGLLIVEYKVKNPFISIKLMLLPKPVLGLLIIAAGTITVAV    281
                     .|.....:|...:|.:.:.:.|.:..:.:...|.|.|.::..|..|.:.|
BL00427___yub    244 FFLAGFIILALFVITDLRAREPLVPFRSLWSAKAVSGTVMAVASHIAIIV    293

BSNT_04576___    282 SLSAFQGLLRQMYDISQEHLILLHLTLLIGVAIAAILSALFYDKVGPGML    331
                     ||:...|.|..:.:.|.|.:...:|....|:...|:||.|.||..|.|:|
BL00427___yub    294 SLAGINGFLENIAEASFESMTRFYLCFFAGILATAVLSTLLYDHFGAGLL    343

BSNT_04576___    332 GIIGGLILVFVNFQWLHMQ---DRSSLYMFAALFIMLAAGTGLTVAAGLM    378
                     |.||.|.::.|..:|..:|   ...|||:.|   ::|.:|..:.:.:|.:
BL00427___yub    344 GCIGALEMIIVGMEWRSVQPGVSMESLYLHA---VLLGSGVSMVLVSGAL    390

BSNT_04576___    379 GAAMGGPLPDLVKRMTAVQFLRLFVYMGVPILIGFFTK------------    416
                     |.|:.|.:....||..::.|:|.|.......:||:|..            
BL00427___yub    391 GTALAGDIHQASKRSVSLHFIRNFAGAWAAPVIGWFASMKNAVHYEMIRG    440

BSNT_04576___    417 -----------------KDAARQSGSVQD----------------SMMTA    433
                                      :|......||.|                |.:.|
BL00427___yub    441 HISEADPEIQLELSKMIRDFVSSGLSVGDAKNMAAYTIVANARKASALGA    490

BSNT_04576___    434 YHDLFFISFILSVLLVCLSFCMNATGMGHKLAHK----PHDKAKTASEKP    479
                     |||||.|...||::::..|....|||.|..|..|    |...|....|..
BL00427___yub    491 YHDLFTILLWLSIIMLAASIGKAATGKGRSLVQKRLRLPDPSASQQKEIG    540

BSNT_04576___    480 AVSAEGLSKATVKSYKVINDTEYRNALRNLQK    511
                                                     
BL00427___yub    540 --------------------------------    540


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_04576 and BL00427

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
