Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04983 and BL00581

See Amino acid alignment / Visit BSNT_04983 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:10
# Commandline: needle
#    -asequence dna-align/BSNT_04983___yvgO.1.5803.seq
#    -bsequence dna-align/BL00581___yvgO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04983___yvgO-BL00581___yvgO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04983___yvgO-BL00581___yvgO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04983___yvgO
# 2: BL00581___yvgO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 583
# Identity:     323/583 (55.4%)
# Similarity:   323/583 (55.4%)
# Gaps:         149/583 (25.6%)
# Score: 831.5
# 
#
#=======================================

BSNT_04983___      1 TTGAAACGTATTCGTATCCCAATGACA------CTTGC--TCTTGGTGCC     42
                                          ||||.|      .||||  ||||  |.|.
BL00581___yvg      1 ---------------------ATGAAAAAAATGTTTGCTTTCTT--TACA     27

BSNT_04983___     43 GCTTTGACAATTGC-CCCTTTGTCCTTTG-CTTCC-------------GC     77
                     |||||    |.||| |..||||.|  ||| ||.||             ||
BL00581___yvg     28 GCTTT----AATGCTCGGTTTGAC--TTGTCTGCCATACTTATCGGAAGC     71

BSNT_04983___     78 TGAAGAA---------------AATCCTGCTCCGAAG----------ATG    102
                     ..|||||               |.|.|||.|.| |||          |||
BL00581___yvg     72 GAAAGAATCAAAACATACGGACAGTTCTGTTAC-AAGCTTGCCTTCTATG    120

BSNT_04983___    103 TC------------------GCAG--------------ACAACTGCTGCT    120
                     ||                  .|||              |.|||.||.|.|
BL00581___yvg    121 TCTATACCTACATCTCTCAATCAGTCATTGAACGAGGAAAAACAGCAGTT    170

BSNT_04983___    121 GGAACAACTGCCGC---TGATGT-AGGTTTAAACGTCAATCTGGATGTAC    166
                       .|.||||.||||   ||||.| ||       |.|||..||.||..| |
BL00581___yvg    171 --TAAAACTTCCGCTATTGATCTCAG-------CATCAGCCTCGACCT-C    210

BSNT_04983___    167 TT-GGAATTGCCAACCAGAT------CGCTGATGCCATCAAATCCGCACA    209
                     || |||||.|..|||..|||      |||| || |..|||||   ||| |
BL00581___yvg    211 TTAGGAATCGGAAACTCGATTAGAGACGCT-AT-CGTTCAAA---GCA-A    254

BSNT_04983___    210 GAACAGGGATGGGTTT-GTGAAAAACCTCATGGA-----GTCTTCCTTCT    253
                     .||| .|.|..||||| ||.||||||..||||||     .|.||..||||
BL00581___yvg    255 TAAC-CGCAGCGGTTTCGTCAAAAACTGCATGGAAACCGCTTTTTATTCT    303

BSNT_04983___    254 ACGCATCCGGCCAAAAATATAATGTCATGGTCTTTAATTTAAGCCAGGAA    303
                       |||   ||.||||.|||.|||||||||||.||.||.||||||||.|..
BL00581___yvg    304 --GCA---GGGCAAAGATACAATGTCATGGTGTTCAACTTAAGCCAAGGC    348

BSNT_04983___    304 TATGAAGATCATTTGAACGGTGTGCAATTTTACGGCTCAGCCGTTTACGA    353
                     |||.|..||..|||.|..||.||..|||||||.||.||.|||...||..|
BL00581___yvg    349 TATCACAATGGTTTAAGAGGAGTTAAATTTTATGGATCTGCCAACTATCA    398

BSNT_04983___    354 CGGCATTACGTATGGCATTTGGGTATTTGAAGATGGAACCTTTACAAACA    403
                     .|||.|.|..||.||||||||||||||||||...|||...|||||||||.
BL00581___yvg    399 TGGCGTGATTTACGGCATTTGGGTATTTGAAAGCGGACAATTTACAAACC    448

BSNT_04983___    404 AAGGCGATGGCGGCTGGATCAACTGGGCCTTCAGAGGCTGGTTCGACCGG    453
                     ||||.||.|||||||||||.|||||||||||.|.|||||||||.||.||.
BL00581___yvg    449 AAGGAGACGGCGGCTGGATTAACTGGGCCTTTAAAGGCTGGTTTGATCGA    498

BSNT_04983___    454 GATGGCAGCACTGTCGCATTTCATCGCCCTTAA    486
                     .|.|||...||.||..||||.|.|...||||||
BL00581___yvg    499 AACGGCCAAACAGTAACATTCCGTAAGCCTTAA    531


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04983 and BL00581

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
