Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04929 and BL00727

See Amino acid alignment / Visit BSNT_04929 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:07
# Commandline: needle
#    -asequence dna-align/BSNT_04929.1.5803.seq
#    -bsequence dna-align/BL00727___liaG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04929-BL00727___liaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04929-BL00727___liaG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04929
# 2: BL00727___liaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1011
# Identity:     511/1011 (50.5%)
# Similarity:   511/1011 (50.5%)
# Gaps:         285/1011 (28.2%)
# Score: 1058.5
# 
#
#=======================================

BSNT_04929         1 ATGAAAAAAATGCTTGGCAAACTGTTGATCACTGCCGGTATTCTGGT--T     48
                     ||||||||||.|.||||.||||||.||||||..|||||.|||||..|  |
BL00727___lia      1 ATGAAAAAAACGGTTGGAAAACTGCTGATCATCGCCGGCATTCTCATCCT     50

BSNT_04929        49 TGTTTCGCTGTTGTCGTAAAAG--ATG-TGTTT-----GC-TGCAGGCCT     89
                     ||                 .||  ||| |||||     || ||.||||.|
BL00727___lia     51 TG-----------------CAGGCATGATGTTTAATGGGCGTGAAGGCTT     83

BSNT_04929        90 GGGTTTCATAAATGGCATAGAAGCCGATTCAGCCAGCGCATCGC------    133
                     ...||||.|   .|||.|.||.|..||.||||||.||.|||..|      
BL00727___lia     84 TTCTTTCTT---CGGCTTCGATGAAGAGTCAGCCCGCACATATCATGCAC    130

BSNT_04929       134 -CGCGG--GACATTGACAGCATGGTCATTGAGTC-----GGATAGCAAGG    175
                      .||||  |||||.||.|..||.|.||||||..|     |.|||.||   
BL00727___lia    131 AGGCGGAAGACATCGATAAAATTGACATTGATGCAAAGAGTATAACA---    177

BSNT_04929       176 ATGTCCGGATTATAGCGGAAGAACGAAGTGACATATCGGCAGGCATTTCA    225
                       |||...|||..|||.|||.|.||...|||.|||...||.|..||||||
BL00727___lia    178 --GTCAACATTCAAGCTGAAAACCGCGATGATATAAAAGCCGAGATTTCA    225

BSNT_04929       226 GGAGACTCAGGAAA--------GTTATTTGT-------------TACTGA    254
                     |||.|      |||        .|.|||.||             ||||  
BL00727___lia    226 GGAAA------AAACGTCCGGCTTGATTCGTCCGAACAGGGGCGTACT--    267

BSNT_04929       255 AAACAAAAGAAAACTGGAGCTGACCGTAAAGGAAAAAGAATTTCAATTTT    304
                                  ||..||||..|||               .|||   ||
BL00727___lia    268 -------------CTTCAGCTTTCCG---------------CTCA---TT    286

BSNT_04929       305 TGAATGG-GTTTAACCGTTCAACT--------------CTTATCGTCAGG    339
                     .|||.|| .|||..|||||...||              ||.||.||||.|
BL00727___lia    287 CGAAAGGCTTTTGGCCGTTTTTCTGGAAGAAAAATGAGCTGATTGTCAAG    336

BSNT_04929       340 CTTCCGTATGATTATAAAGGTGATCTGGC-AGTAC-----GAACC-----    378
                     .|.||.|.|||.|||||||.|||||||.| |.|.|     |||.|     
BL00727___lia    337 ATCCCTTCTGAATATAAAGATGATCTGTCGATTTCTTCTGGAAGCGGAAA    386

BSNT_04929       379 --TCAA--------GCGGCGACTTGTCTGTGGCCGGGAATGACCATCTTG    418
                       ||||        ||||||    |||||              ||| |||
BL00727___lia    387 TGTCAAACTGTCCGGCGGCG----GTCTG--------------CAT-TTG    417

BSNT_04929       419 CGCTTTCCGGGCTGAACGCAGTATCTGCGAGCGGAAATACGAGCGTGACG    468
                     ||...|...|.||.||.|     ||.|..|||||      .|||.|.|.|
BL00727___lia    418 CGAAATGTAGCCTTAAAG-----TCGGGAAGCGG------CAGCCTCAAG    456

BSNT_04929       469 GACGTACG-CCTTC------AAGACC------TGAAAGTGAAGGCATCAT    505
                     |.|| |.| |||||      ||||||      |.||||.||.|.||..||
BL00727___lia    457 GCCG-ATGACCTTCAGGCGGAAGACCTTTCTGTAAAAGGGACGTCAGGAT    505

BSNT_04929       506 CGGGGGATGTTTCCATTTCAAATACCGTCTCTAAAA----CAGCCGGCA-    550
                     |||              |||      |.||..||||    ||..||||| 
BL00727___lia    506 CGG--------------TCA------GGCTGGAAAACGTTCAAACGGCAG    535

BSNT_04929       551 ---TTGAT-TTAGCT-----TCAGGGGACGCAAATCTGGTTCATGTATCA    591
                        .|||| |..|||     ||.||..|..||||.||.|...||||..|.
BL00727___lia    536 CTGCTGATATCCGCTCCACATCCGGTAATACAAAACTTGAAAATGTCACC    585

BSNT_04929       592 GGC--TCTCTTGATGTGAAAATGACTTCAGGAGATTTTAATGCTGTATTG    639
                     |||  .|||...|  |.|||..||||||.||..||||....|||...||.
BL00727___lia    586 GGCAAACTCAGCA--TCAAACAGACTTCGGGCAATTTGCGCGCTTCCTTT    633

BSNT_04929       640 AAAAAGGTAACCGGTCCCGTATCTG----TCACGCTGACAAGCGGTGATG    685
                     |.|.||.|.|.||.|    |.||||    |||..|.||||..|||..|..
BL00727___lia    634 ACAGAGATCAACGAT----TCTCTGAGCATCAAACAGACATCCGGAAACA    679

BSNT_04929       686 CTAATGTAAGCCTTCCCCAAAACGGCTGCTTTGCAGTCAATGCTTTA---    732
                     |.||..|.|||||.|||.|..|.|.|..|.|  ||||     |||.|   
BL00727___lia    680 CCAAGCTCAGCCTGCCCGATGATGCCGACAT--CAGT-----CTTGAAGC    722

BSNT_04929       733 ----TCAGCAAGCGGATACGTCAGTTCGCCGTATTCATTTGCTGACAAAG    778
                         ||..||||||||.||.|||||....|.||||||||   ||||.|||
BL00727___lia    723 CGAGTCGACAAGCGGAAACATCAGTCATTCCTATTCATT---TGACCAAG    769

BSNT_04929       779 -CACATAAAGAACAGCATCACATCACAGGCACGC------------AAGG    815
                      |.| .||.||..|||            |.||||            ||||
BL00727___lia    770 TCGC-CAATGAGAAGC------------GGACGCTGACTGGAAAAAAAGG    806

BSNT_04929       816 AAGCGGCCGGCATCCAATCGACATC---AAAACGGACAGCGGGGATCTAG    862
                     ||..||.....||..||||||||||   |..|||   ||||||.||.|..
BL00727___lia    807 AAATGGAAAAAATAAAATCGACATCTCAATTACG---AGCGGGAATGTCT    853

BSNT_04929       863 CGATACGGTAG    873
                     |.||...|||.
BL00727___lia    854 CAATTGAGTAA    864


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