Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04926 and BL00729
See
Amino acid alignment /
Visit
BSNT_04926 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:07
# Commandline: needle
# -asequence dna-align/BSNT_04926___yvqE.1.5803.seq
# -bsequence dna-align/BL00729___liaS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04926___yvqE-BL00729___liaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04926___yvqE-BL00729___liaS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04926___yvqE
# 2: BL00729___liaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1126
# Identity: 778/1126 (69.1%)
# Similarity: 778/1126 (69.1%)
# Gaps: 104/1126 ( 9.2%)
# Score: 2562.5
#
#
#=======================================
BSNT_04926___ 1 ATGAGAAAAAAAATGCTTGCCAGCCTCCAATGGCGCGCCATCCGCATGAC 50
|||||||..||.|..|||||.|.|.|.||||||||||||.|||||.|..|
BL00729___lia 1 ATGAGAACGAACAGACTTGCAAACATTCAATGGCGCGCCGTCCGCTTATC 50
BSNT_04926___ 51 AACGGGAATCAGCCTGCTCC--TTTTTGCCTGCCTGATTT--CCTTTATG 96
....||..|||||.| |.| ||||| ||..|||..|| .|||||||
BL00729___lia 51 CCTTGGTGTCAGCTT--TACGATTTTT--CTTGCTGTATTGGGCTTTATG 96
BSNT_04926___ 97 ATGTTTTACTATCGGCTCGATCCGCTTGTTTTGCTGTCA-----TCTAGC 141
.|||||||.||.|.|||.||||||...| ||| ||| ||.||.
BL00729___lia 97 CTGTTTTATTACCAGCTGGATCCGAGGG---TGC--TCATCGTTTCCAGG 141
BSNT_04926___ 142 TGGTTCGGAATTCCGTTTATCCTGATT-TTGCTTCTGATCAGCGTGACCG 190
||||||||.||||||||||||..|.|| |.||.| ||||||||....|.|
BL00729___lia 142 TGGTTCGGGATTCCGTTTATCGCGCTTCTCGCAT-TGATCAGCACAGCTG 190
BSNT_04926___ 191 TCGGTTTCGCCTCAGGGTATATGTACGGCAACCGGTTGAAGACAAGGATT 240
||||.||||.||||||.|||||||.||||||.|.|.||||.|.|.||.||
BL00729___lia 191 TCGGGTTCGGCTCAGGCTATATGTTCGGCAATCAGCTGAAAAAACGGCTT 240
BSNT_04926___ 241 GATACATTAATTGAATCCATTTTAACCTTTGAAAACGGCAATTTCGCTTA 290
||.|...|.||.||.||.|||.|||..|..|||||||||||.||.||.||
BL00729___lia 241 GAAAAGCTGATCGAGTCTATTCTAAAGTACGAAAACGGCAACTTTGCCTA 290
BSNT_04926___ 291 TCGGATACCGCCGCTCGGTGATGATGAAATCGGCCTGGCTGCTGATCAGC 340
.|||||.||..||||.||.||.|||||.|||||.|||||.||.||.||||
BL00729___lia 291 CCGGATTCCATCGCTTGGAGACGATGAGATCGGGCTGGCCGCCGACCAGC 340
BSNT_04926___ 341 TGAACGAAATGG-CGAAGCGCGTGGAACTTCAAGTCGCATCCCTCCAGAA 389
|.||.||.|||| |||| ||..|.|||...||.||.||.||..|.||.||
BL00729___lia 341 TCAATGAGATGGCCGAA-CGGATCGAAAGACAGGTTGCCTCTTTGCAAAA 389
BSNT_04926___ 390 ACTTTCCAATGAACGTGCGGAATGGCAGGCTCAAATGAAGAAGTCGGTTA 439
.||.||||||||..|.|||||||||||||.|||||||||.||.|||||.|
BL00729___lia 390 GCTGTCCAATGAGAGAGCGGAATGGCAGGATCAAATGAAAAAATCGGTGA 439
BSNT_04926___ 440 TCTCAGAAGAACGCCAGCGATTGGCCAGAGATCTTCATGATGCGGTCAGC 489
||||.|||||.||.|||||..|.||..|.||..|.|||||||||||.|||
BL00729___lia 440 TCTCCGAAGAGCGGCAGCGTCTCGCGCGCGAATTGCATGATGCGGTGAGC 489
BSNT_04926___ 490 CAGCAGCTCTTTGCCATATCGATGATGACATCAGCCGTGCTGGAACATG- 538
||||||||.|||||.||.||.||||||||.|||||.||..|||| |
BL00729___lia 490 CAGCAGCTGTTTGCGATTTCCATGATGACTTCAGCTGTTTTGGA----GG 535
BSNT_04926___ 539 ---TCAAGGAT---GCTGATGACAAAA---CAGTCAAGCGGATCAGGATG 579
||.|.|.| ||||||| |||| |..|||| .||.|.|..|||
BL00729___lia 536 GAATCGATGCTGCGGCTGATG--AAAAGCTCGCTCAA-AGGCTGAAAATG 582
BSNT_04926___ 580 GTCGAGCATATGGCAGGCGAAGCCCAAAATGAGATGAGGGCGCTGCTGCT 629
|||||..|.|||||.|.|||.|||||.|||||.|||||||||||.||..|
BL00729___lia 583 GTCGAAAAAATGGCGGCCGATGCCCAGAATGAAATGAGGGCGCTCCTTTT 632
BSNT_04926___ 630 CCATTTACGGCCTGTTACCCTTGAAGGAAAAGGGCT-GAAGGAGGGCCTT 678
.|||||.||.||||||||.||||||||.|||||.|| .|||.|||| |||
BL00729___lia 633 GCATTTGCGACCTGTTACGCTTGAAGGGAAAGGTCTACAAGAAGGG-CTT 681
BSNT_04926___ 679 ACGGAGCTTTTGGACGAGTT----CCGAAAAAAGCAGCCGATTGATATTG 724
.|.||.||||||.|.||.|| .||||| |||.||||.||.||.|
BL00729___lia 682 GCAGACCTTTTGAAAGAATTTAAAGCGAAA----CAGTCGATCGACATCG 727
BSNT_04926___ 725 AGTGGGATATACAGGACACAGCGATA--TCC-AAGGGTGTTGAAGACCAC 771
|.|||||.||..||||..|.|..|.| ||| ||.|||||.|||||||||
BL00729___lia 728 ATTGGGAGATTGAGGATGCGGGCAAACTTCCGAAAGGTGTGGAAGACCAC 777
BSNT_04926___ 772 TTGTTCAGAATCGTGCAGGAGGCCCTTTCAAACGTATTTAGACATTCAAA 821
.|||||||.|||||.||.||.||.||.||||||||.||..|.||||||||
BL00729___lia 778 CTGTTCAGGATCGTTCAAGAAGCGCTCTCAAACGTGTTCCGGCATTCAAA 827
BSNT_04926___ 822 AGCGTCAAAAGTAACCGTGA---TTCTAGGCATAAAGAACAGCCAGCTCC 868
||||.|||||||.|||||.| |.|| || |.|.|||||..|||||||
BL00729___lia 828 AGCGACAAAAGTCACCGTCAGACTGCT--GC-TCAGGAACAAACAGCTCC 874
BSNT_04926___ 869 -GTCTGAAGGTGATTGATAATGGAAAAGGCTTTAAAATGGA--CCAGGTG 915
|| ||||.||.|||||.|||||..||||.|||||.||||| || ||.
BL00729___lia 875 AGT-TGAAAGTCATTGACAATGGCGAAGGATTTAAGATGGATGCC--GTC 921
BSNT_04926___ 916 AAAGCATCCTCATACGGATTGAATTCTATGAAAGAACGTGCAAGTGAAAT 965
|||.||||.||.|||||..||||.||.||.||.|||.|.||.||.|||.|
BL00729___lia 922 AAAACATCTTCGTACGGGCTGAACTCGATCAAGGAAAGAGCCAGCGAAGT 971
BSNT_04926___ 966 CGGCGGGGTCGCCGAAGTGATTTCAGTAGAAGGAAAAGGCACCCAAATCG 1015
||||||.||.||.|||.|.||||||.|....||||||||.||.||..|.|
BL00729___lia 972 CGGCGGAGTGGCAGAAATCATTTCATTTACGGGAAAAGGAACACAGGTTG 1021
BSNT_04926___ 1016 AAGTGAAGGTCCCGATTTT----CCCGGAAGAAAAAGGAGAG----AACG 1057
|.||.|||||.|||||||| | ||.||||||||||| ||
BL00729___lia 1022 ATGTAAAGGTTCCGATTTTTGAAC----AACAAAAAGGAGAGGCTTAA-- 1065
BSNT_04926___ 1058 AACGTGATTCGAGTATTATTGATTGA 1083
BL00729___lia 1065 -------------------------- 1065
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.