Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01030 and BL00841
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_01030___thiL.1.5803.seq
# -bsequence dna-align/BL00841___thiL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01030___thiL-BL00841___thiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01030___thiL-BL00841___thiL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01030___thiL
# 2: BL00841___thiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1067
# Identity: 663/1067 (62.1%)
# Similarity: 663/1067 (62.1%)
# Gaps: 172/1067 (16.1%)
# Score: 1878.0
#
#
#=======================================
BSNT_01030___ 1 ATGGATGAATTTGATTTGATACATAGCATTACTCCGCGGACCATTCACCA 50
|||||.||||||||.||.||.||.||.|||||.|| ||.||| .|.
BL00841___thi 1 ATGGACGAATTTGAATTAATTCAAAGGATTACGCC-----CCGTTC-GCT 44
BSNT_01030___ 51 TTCT--TCCG----TTGATGTAGGAATAGGGGATGATGCAGCGCTCTA-C 93
|||| ||.| |.||..|.||.||.||.||.|||||.||..|.|| |
BL00841___thi 45 TTCTCATCGGGAAATAGAAATCGGTATTGGAGACGATGCCGCTGTTTATC 94
BSNT_01030___ 94 ACTGCGA--AACACGGCGT--TCAGGAAATTGTTTGTGTTGATACTATGG 139
| |.||| |||| .| ||||||.||.|||...||.|||||.||||
BL00841___thi 95 A-TACGAAGAACA----ATTATCAGGAGATCGTTGCAGTCGATACGATGG 139
BSNT_01030___ 140 TAGAAGACGTGCACTTCAAATTACACTATTCCTCACCTGAAGATATCGGG 189
|.||.|...|.||.||...||.|..|.||||.||.||||..||||||||.
BL00841___thi 140 TCGACGGTATTCATTTTTTATCATCCCATTCATCGCCTGCCGATATCGGA 189
BSNT_01030___ 190 TATAAGGCGTTAGCCGTTAATATAAGTGATATTGCCGCGATGGGAGGCAT 239
|||||.||.||.||.||.|||||.||.|||||||||||.|||||||||..
BL00841___thi 190 TATAAAGCATTGGCTGTGAATATTAGCGATATTGCCGCAATGGGAGGCCG 239
BSNT_01030___ 240 TCCGAAATTTTATTTGGTATCACTTGCGGTACCTTCAAAATGGACGGCAT 289
.||.||.|..|||.|.||.|||.|.||.||.|||||....|||...||..
BL00841___thi 240 ACCCAAGTACTATCTTGTGTCAATCGCCGTTCCTTCCGGTTGGGGCGCGA 289
BSNT_01030___ 290 CCGAAATCAAGGCGATGTATGAAGGAATGAATGAACTGGCGAAACTATAT 339
|.||.||..|.||.||||||||||.|||||||.|||||||||.|||||||
BL00841___thi 290 CGGATATTGAAGCCATGTATGAAGAAATGAATAAACTGGCGACACTATAT 339
BSNT_01030___ 340 CAGATGGATCTGATTGGCGGCGATACAGTTTCT--------ACCGCTGAC 381
.|.||||||.|.||.|||||.||.||.||.||| .||||
BL00841___thi 340 GAAATGGATTTAATCGGCGGGGACACCGTATCTGCAAACGGGCCGC---- 385
BSNT_01030___ 382 AAATTAGTCGTT---ACAGTCACTGTGATCGGTGAAGTTGAAAAGGGACG 428
||||| ||.||.||.|..|||||.|||.||||||||||..|
BL00841___thi 386 -------TCGTTTTGACCGTAACAGCAATCGGCGAAATTGAAAAGGGCAG 428
BSNT_01030___ 429 TGCCTGTTTGCGCAGTC-TGGCAAGACCGAATGATGTTGTGTTTGTAACC 477
..|.|||||..|.||.| ||.|.||.||| .||||||.||.|||||.||.
BL00841___thi 429 ATCTTGTTTAAGGAGCCATGCCGAGCCCG-GTGATGTCGTTTTTGTGACG 477
BSNT_01030___ 478 GGTGAAATCGGTTCTTCTGCAGCAGGGCTTTCTT---TATTG-------- 516
||.|||.|.||.||.||.||.||.||.||.|||| |||||
BL00841___thi 478 GGAGAACTTGGCTCATCAGCTGCCGGCCTGTCTTTTATATTGGGCCAAAC 527
BSNT_01030___ 517 --CTG-----GAAGAGACTAATCCTCAAAACTCATCTGTGGAAACGGATT 559
|.| ||.|||||..|..||||| |
BL00841___thi 528 ATCGGCGAGAGACGAGACGCAGTCTCAA---------------------T 556
BSNT_01030___ 560 ACTTTATCCACAGGCATAAACGGCCTGAGCCAAGAGT--AAGCGTCGGCA 607
|||||||..|..||||.||..||||||||||.||.|| ||||
BL00841___thi 557 ACTTTATTGAGCGGCACAAGAGGCCTGAGCCGAGGGTGGAAGC------- 599
BSNT_01030___ 608 GATTATGCTCGATTTTTAAACG------------GGCAGCTTTAAATGAT 645
|.|.|.|||.|.|..||| ||| |||| ||||||
BL00841___thi 600 ----AGGTTTGATCTGTTCACGCTATCACCATGTGGC-GCTT--AATGAT 642
BSNT_01030___ 646 GTTAGTGACGGATTGGCTAGTGAACTGAACGAGATTGCAGAAGCCAGCTG 695
.|.||.|||||..|.||.||||||.|.||.||.|||||.|||||.|||.|
BL00841___thi 643 ATCAGCGACGGGCTTGCCAGTGAATTAAATGAAATTGCTGAAGCGAGCCG 692
BSNT_01030___ 696 TGTTTCAATTGAAATTGATGAAAGCA--TGCTTCCAATTCATTCTGATTT 743
||||||.|||||.||..|| |||| | ||.||||..|.|||||.|||||
BL00841___thi 693 TGTTTCCATTGACATATAT-AAAG-AGTTGATTCCGGTCCATTCGGATTT 740
BSNT_01030___ 744 GCCTAAGCTTCATCCTAACTGGAAAGAATGGG--CTTTGTTTGGCGGTGA 791
.|.||...|.||..|.||.|||.||||.|||| ||| ||.|||||.||
BL00841___thi 741 ACATATATTGCACACAAAATGGGAAGAGTGGGTCCTT--TTCGGCGGCGA 788
BSNT_01030___ 792 GGATTTTGAGCT-GACAGGGACGGTTTCAAAAGAGGAGTGGGAA-GTGTT 839
|||||||||.|| |.| ||.|||.||||.||.||..|.|||||| ||.||
BL00841___thi 789 GGATTTTGAACTCGTC-GGTACGATTTCTAATGATCAATGGGAACGTTTT 837
BSNT_01030___ 840 GAAG-CAGCAGTGCGC--AGCACGTCAACTTCC-----CATTACAAAGAT 881
|| |||.|.|||.| ||||.| |..|.| ||| ||| ||
BL00841___thi 838 --AGTCAGGAATGCTCCGAGCATG---ATGTGCGGGTTCAT--CAA--AT 878
BSNT_01030___ 882 TGGCCATGTCAGGGAAAAAACAA----AATCTAAAGTG----ATCCT-AA 922
.||||..||| |.||||||| |..|..||||| |||.| |.
BL00841___thi 879 CGGCCGCGTC----ACAAAACAAGGACAGGCGGAAGTGTTTTATCATGAC 924
BSNT_01030___ 923 AAACAGATCAAACATCAATGATCT--TAGAGAAAAAGGGATATAATCATT 970
..|||| .||..| |.||| |.||.|||||.||||||||.||||
BL00841___thi 925 GGACAG----GACCGC---GTTCTTCTCGAAAAAAAAGGATATAACCATT 967
BSNT_01030___ 971 TTAAATAA--------- 978
|||||.||
BL00841___thi 968 TTAAACAAGACAGGTGA 984
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