Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01031 and BL00842

See Amino acid alignment / Visit BSNT_01031 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence dna-align/BSNT_01031___ydiB.1.5803.seq
#    -bsequence dna-align/BL00842___ydiB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01031___ydiB-BL00842___ydiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01031___ydiB-BL00842___ydiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01031___ydiB
# 2: BL00842___ydiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 482
# Identity:     354/482 (73.4%)
# Similarity:   354/482 (73.4%)
# Gaps:          10/482 ( 2.1%)
# Score: 1236.0
# 
#
#=======================================

BSNT_01031___      1 GTGAAGCAA--TTAAAATGGAGAACTGTAAATCCAGAAGAAACAAAAGCA     48
                     |||||  ||  |||.|.||||.|||...|.|.||.|||||.||||||...
BL00842___ydi      1 GTGAA--AACGTTAGAGTGGAAAACGACAGAGCCTGAAGAGACAAAAAAC     48

BSNT_01031___     49 ATTGCCAAGCTTGCGGCAGCGTTTGCTAAACCGGGAGACGTCCTGACATT     98
                     |||||||.|||.||||||...|.||.|.|.||.||.||.|||.|.|||||
BL00842___ydi     49 ATTGCCAGGCTGGCGGCAAAATATGTTCAGCCCGGTGATGTCATCACATT     98

BSNT_01031___     99 AGAGGGCGATTTAGGTGCAGGAAAAACGACTTTTACGAAAGGTTTTGCAG    148
                     .|||||||||.|.||.|||||.||||||||||||||||||||.|||||.|
BL00842___ydi     99 GGAGGGCGATCTTGGAGCAGGCAAAACGACTTTTACGAAAGGGTTTGCCG    148

BSNT_01031___    149 AAGGGCTGGGAATTACACGTATTGTAAACAGTCCGACTTTTACAATTATA    198
                     |||||.|.||.||.|..||..||||.|.|||.|||||||||||.||.||.
BL00842___ydi    149 AAGGGATCGGCATCAAGCGGGTTGTCAGCAGCCCGACTTTTACCATCATC    198

BSNT_01031___    199 AAAGAATATAACGATGGCGTACTTCCTCTTTATCACATGGATGTGTATAG    248
                     ||||||||....||.|||...|||||.||.|.|||.|||||||||||.||
BL00842___ydi    199 AAAGAATACCGTGACGGCTCTCTTCCGCTGTTTCATATGGATGTGTACAG    248

BSNT_01031___    249 AATGGAAGATGAAAGTGAAGATTTGGGACTTGATGAATATTTTCACGGAC    298
                     .||||||||.||.|..||||||.|.|||.|.||||||||||||.|.|||.
BL00842___ydi    249 GATGGAAGACGAGACGGAAGATCTCGGATTAGATGAATATTTTGAGGGAG    298

BSNT_01031___    299 AAGGTGTCTGTCTCGTTGAATGGGCTCATTTAATTGAAGAACAGCTGCCA    348
                     |.||.|||||.||.||.||||||||.|||||.||||||||.|||||.|||
BL00842___ydi    299 ACGGCGTCTGCCTTGTGGAATGGGCGCATTTGATTGAAGAGCAGCTTCCA    348

BSNT_01031___    349 CAGGAGCGACTGCAAATTGTCATCAAAAGAGC-TGGTGATGATGAGCGGG    397
                     .|.||.||.||..|..|.|||||.||..| || |||||||||..|||  |
BL00842___ydi    349 AAAGAACGCCTTGAGGTGGTCATTAAGCG-GCTTGGTGATGACAAGC--G    395

BSNT_01031___    398 AAA--TTACCTTTACTGCTGTCGGGAATCGGTATGAAATGCTTTGTGAGG    445
                     |||  |.||||||||..||...||.|..||.||.||||..|||||.||||
BL00842___ydi    396 AAAGCTGACCTTTACACCTAAAGGCAGGCGCTACGAAAATCTTTGCGAGG    445

BSNT_01031___    446 AGTTAAGTAGACATGACAATATTAGCAATTGA    477
                     ||.|.||.|.|||||||.|||.|.||.|||||
BL00842___ydi    446 AGATCAGCAAACATGACGATACTTGCGATTGA    477


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.