Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00126 and BL00855

See Amino acid alignment / Visit BSNT_00126 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:48
# Commandline: needle
#    -asequence dna-align/BSNT_00126___yacD.1.5803.seq
#    -bsequence dna-align/BL00855___yacD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00126___yacD-BL00855___yacD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00126___yacD-BL00855___yacD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00126___yacD
# 2: BL00855___yacD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity:     644/929 (69.3%)
# Similarity:   644/929 (69.3%)
# Gaps:          73/929 ( 7.9%)
# Score: 2090.5
# 
#
#=======================================

BSNT_00126___      1 TTGAAATCAAGAACAATCTGGACCATTATTTTAGGGGCGCTGTTGGT---     47
                     ||||||||.||||||.|.|||.|.|||||||||||.|||.|.||.||   
BL00855___yac      1 TTGAAATCGAGAACACTTTGGCCGATTATTTTAGGTGCGATCTTCGTCAA     50

BSNT_00126___     48 TTGCTGTATTGCTG-TTGCATATACGCTGACGAAATCCCAAACCGGCGCA     96
                     ||||   |||| || |.||.|||...|||||||||.|.||.||   |||.
BL00855___yac     51 TTGC---ATTG-TGATCGCGTATGTTCTGACGAAAGCGCAGAC---CGCT     93

BSNT_00126___     97 TCGTCATCCGGTGAGTCT---------ATTGCGACTATCGGA------GG    131
                     ||.|||||  ||.|| ||         |||||...|||||||      ||
BL00855___yac     94 TCTTCATC--GTCAG-CTCAAGAAGTCATTGCCCATATCGGAAAAAACGG    140

BSNT_00126___    132 CAAGAGTGTGACAAGAGAAGAATGGCTGAAAGAAATGGAAGATCAGTATG    181
                     ||      |.||..|.|||||||||||||..|||||||||||.|..||.|
BL00855___yac    141 CA------TCACGCGTGAAGAATGGCTGAGCGAAATGGAAGAGCGCTACG    184

BSNT_00126___    182 GTAAGTCAACGCTTGAAGATATGATCAATGTCCGAGTTGTTGAGCAGCTG    231
                     |.||.|||||.|||||||||||||||||.|.|||.||.|||...||..||
BL00855___yac    185 GAAAATCAACCCTTGAAGATATGATCAACGACCGCGTAGTTACCCAAATG    234

BSNT_00126___    232 GCTAAAAAGAACAACCTTAAAATATCCAAAAGCGAAGTTGATCGTGAGTT    281
                     ||..||||.|||||..|.|||.|.||..|....||..||||..|.||.||
BL00855___yac    235 GCCGAAAAAAACAAGATCAAAGTGTCTGATGATGACATTGAAAGAGAATT    284

BSNT_00126___    282 TTTGCTGATTAAAGCGGTCAATAATTCCTTTTACGAAGATGAACATACGA    331
                     |.|||||||||||||.||..|.||||||||.||||||||.|||.|.||.|
BL00855___yac    285 TCTGCTGATTAAAGCTGTATACAATTCCTTCTACGAAGACGAAAACACAA    334

BSNT_00126___    332 CGGAGAAAGAGTGGAAAGACCAAATTCGTTATAATATCCTCCTTGAGGAA    381
                     |.||.|||||.||||||||.||.||.....|||||||.||.|||||.||.
BL00855___yac    335 CAGAAAAAGAATGGAAAGAGCAGATCAAGCATAATATTCTTCTTGAAGAG    384

BSNT_00126___    382 TTGTTAACAAGGGATATCGATATCTCAAACAAAGAATTGGAATCATTCTA    431
                     .|..|.||||..||.||.|..||.||..|||..||||||.|.||||||||
BL00855___yac    385 CTCCTGACAAAAGACATTGTCATTTCTGACAGCGAATTGAAGTCATTCTA    434

BSNT_00126___    432 TAATAAAAATAAGGAACTATATCAGTTTGATGATTCGTATCG----AATT    477
                     |||.|||||||||||..|||||.|.||.||||||||.|||||    ||  
BL00855___yac    435 TAACAAAAATAAGGACTTATATAAATTCGATGATTCTTATCGCCTCAA--    482

BSNT_00126___    478 CGGCACATTGTTGTAAAGGATGAAGAAGAAGCGAG-AGAAGTCCTGAAAG    526
                       |||.||.|||||.||.|||.||||.||||| || |.||||.||.||||
BL00855___yac    483 --GCATATCGTTGTCAAAGATAAAGATGAAGC-AGAACAAGTTCTTAAAG    529

BSNT_00126___    527 AACTGAAAGGCGGATCAAGCTTTGAAGCTGTCGCTGCCGAAAGATCCACT    576
                     |||||||.|..||.||.||.||||||||.|.|||.||||||...||.|||
BL00855___yac    530 AACTGAAGGAAGGGTCCAGTTTTGAAGCGGCCGCAGCCGAACACTCGACT    579

BSNT_00126___    577 GACAGATATACATCACCATACGGCGGAGATTTAGGTTTTGTCACAGA--G    624
                     |||.|.|||||..|.||.||||||||.||..|.|||||.||||..||  .
BL00855___yac    580 GACCGGTATACGGCTCCTTACGGCGGCGACCTCGGTTTCGTCAATGATCA    629

BSNT_00126___    625 GCATCAGACAACATTCCATCAGCATACATTGAAG--AGGCGAAAACACTC    672
                     ||||  ||.|||.||||..|.|.||| .|||.||  ||..|||.| |||.
BL00855___yac    630 GCAT--GAAAACGTTCCGGCCGAATA-TTTGGAGAAAGCTGAACA-ACTA    675

BSNT_00126___    673 AAAGAGGATGAATGGTCTCAGGAACCAATAAAGGTCAACA----ACGGAT    718
                     ||.||..||.|||||....|.|||||.||.||    ||||    |.||.|
BL00855___yac    676 AAGGAAAATCAATGGGTGGATGAACCGATTAA----AACAAGCCAGGGCT    721

BSNT_00126___    719 ATGCCATTATCCAGCTGAAAGAAAAACT--AAAGGCAAGAACGTTCTCAT    766
                     ||||.|||||||||||.||||||||.||  ...||||||  |.|||.| |
BL00855___yac    722 ATGCGATTATCCAGCTCAAAGAAAAGCTCCCGGGGCAAG--CTTTCAC-T    768

BSNT_00126___    767 TTGA-TGAAGTAAAGGACCAGATCAGACGGCAAATCGCAATGGATCAGCT    815
                     |..| .|||||.||..|.||.||||||.||||.|||||.||||||||..|
BL00855___yac    769 TACAGCGAAGTGAAAAATCAAATCAGAAGGCAGATCGCGATGGATCAATT    818

BSNT_00126___    816 AGGCGATAAAGCGACAGTTAAGACACTTTGGAAAGAAGCCGATGTATCTT    865
                     ||||||.|||||..|.||.|||||.||.||||||||.||..|..|.||||
BL00855___yac    819 AGGCGACAAAGCTTCTGTCAAGACGCTCTGGAAAGATGCGAAACTGTCTT    868

BSNT_00126___    866 GGTTTTATGGGGAAAAAAGTACTAAGTGA    894
                     |||||||||..||.||||  |.|||    
BL00855___yac    869 GGTTTTATGACGATAAAA--AATAA----    891


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