Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05915 and BL00942

See Amino acid alignment / Visit BSNT_05915 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05915___yxlF.1.5803.seq
#    -bsequence dna-align/BL00942___yxlF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05915___yxlF-BL00942___yxlF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05915___yxlF-BL00942___yxlF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05915___yxlF
# 2: BL00942___yxlF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 989
# Identity:     591/989 (59.8%)
# Similarity:   591/989 (59.8%)
# Gaps:         202/989 (20.4%)
# Score: 1614.0
# 
#
#=======================================

BSNT_05915___      1 ATGCTGTCTATTGAATCA-----TTATGCAAATCGTA-CAG--GCACCAT     42
                     ||||||||     ..|||     |||...|||..||| |||  |||||  
BL00942___yxl      1 ATGCTGTC-----CGTCAATGGCTTAACAAAAATGTATCAGCAGCACC--     43

BSNT_05915___     43 GAAGCTGTAAAGAATGTCAGTTTTCACGTGAATGAAAATGAG---TGTGT     89
                      |||||||..|.||||||||.|||.||.|   ||||.||.||   ||.||
BL00942___yxl     44 -AAGCTGTCCAAAATGTCAGCTTTGACCT---TGAATATCAGCAATGCGT     89

BSNT_05915___     90 CGCACTATTAGGACCTAATGGAGCCGGCAAAACCACGACTCTGCAAATGC    139
                     .||.||..|.||.||.||.|||||.||.|||||.||.||..|||||||||
BL00942___yxl     90 TGCCCTTCTCGGGCCGAACGGAGCGGGAAAAACGACCACATTGCAAATGC    139

BSNT_05915___    140 TGGCCGGACTGCTTT-----CGCCAACCTCTGGAACCATAAAGCTGTT--    182
                     |..||||     |||     |.||.||.||.|||..||| ..|||.||  
BL00942___yxl    140 TTTCCGG-----TTTATTGGCCCCTACATCAGGACGCAT-CCGCTTTTTG    183

BSNT_05915___    183 AGGAGAGAA-----AAA---GCTGGATCGGCGTTTGATTGGGTACCTCCC    224
                     .||||||||     |||   ||||||         .||.||.||..|.||
BL00942___yxl    184 GGGAGAGAATCGATAAACAGGCTGGA---------AATCGGATATTTGCC    224

BSNT_05915___    225 GCAGTATCCTGCTTTTTATTCGTGGATGACCGCAAATGAATTTTTGACAT    274
                     .|||.|||||||.||||.|||.||||||||.||....||||.|..|..||
BL00942___yxl    225 TCAGCATCCTGCGTTTTTTTCATGGATGACAGCTTTAGAATATACGGTAT    274

BSNT_05915___    275 TTGCGGGGAGACTGTCCGGCCTTTCGAAGAGAAAATGCCAAGAGGAAATC    324
                     |.||.|..||.||.|||              ||||||         ||.|
BL00942___yxl    275 TCGCTGCAAGGCTTTCC--------------AAAATG---------AAAC    301

BSNT_05915___    325 G--GTGAGATGCTGGAA---------------------TTTGTCGGTTT-    350
                     |  ||||....||||||                     |.|||||||.| 
BL00942___yxl    302 GTCGTGAAGCCCTGGAAAAGAGTCGAACCGCTTTGCGCTATGTCGGTCTG    351

BSNT_05915___    351 -----GCACGAAG--CGGCGCACAAAAGGATCGGGGGCTATTCAGGAGGC    393
                          |.|.||||  |||      |||  |||||.||.|.|||||||||.
BL00942___yxl    352 GAAAAGGAAGAAGACCGG------AAA--ATCGGCGGTTTTTCAGGAGGG    393

BSNT_05915___    394 ATGAAACAAAGACTCGGTCTGGCACAGGCACTGCTCCATAAACCGCAGTT    443
                     |||||.|||||.|||||.|||||.|||||..||.|.|||.|.|.|..|.|
BL00942___yxl    394 ATGAAGCAAAGGCTCGGGCTGGCGCAGGCTTTGGTTCATGAGCAGAGGCT    443

BSNT_05915___    444 TTTGATATTGGATGAACCGGTGTCTGCTCTTGATCCGACAGGGCGGTTCG    493
                     .|||||.|||||||||||.||.||.||.||.||||||.|.||||||..||
BL00942___yxl    444 GTTGATTTTGGATGAACCTGTTTCCGCCCTGGATCCGGCGGGGCGGCGCG    493

BSNT_05915___    494 AGGTGCTGGACATAATGCGGGAGCTGAAAAAGCATATGGCCGTTCTGTTT    543
                     |.|||||.||.||.|||..|||..|.||||||.|.|||.|..|.||.|||
BL00942___yxl    494 AAGTGCTTGATATGATGAAGGATTTAAAAAAGAAGATGACAATCCTATTT    543

BSNT_05915___    544 TCTACACATGTTTTGCACGATGCAGAGCAGGTGTGTGATCAAGTGGTGAT    593
                     ||.||.|||||..||||.|||||.||..|||||||.|||||||||.|.||
BL00942___yxl    544 TCGACTCATGTGCTGCATGATGCCGAAGAGGTGTGCGATCAAGTGATCAT    593

BSNT_05915___    594 TATGAAAAACGGTGAAATTTC--ATGGAAAGG--CGAGTTACAGGAGCTG    639
                     ..|||||.|.||.|  .|.||  ||||...||  ||..|.||||  ..||
BL00942___yxl    594 GCTGAAAGAAGGGG--CTGTCAAATGGTCTGGTCCGCTTCACAG--ATTG    639

BSNT_05915___    640 AAACAACAGCAGCAAACGAA-CGT--TTT------------TACCCTTTC    674
                     ||               ||| |||  |||            ||..||..|
BL00942___yxl    640 AA---------------GAACCGTCATTTAAAGCCATCATATATGCTGAC    674

BSNT_05915___    675 AG-TGAAAGAGAAG-CTGGAAGGTTGGCTTGAAGAGAAGCCTTACGTCTC    722
                     || || |||| ||| ||.|||||.|||||.|||.|...||||||  |.||
BL00942___yxl    675 AGCTG-AAGA-AAGTCTTGAAGGATGGCTGGAACACCTGCCTTA--TGTC    720

BSNT_05915___    723 AGCTA--TTGTCTATAAGAATCCGTCCCAAGCGG--TTTT-------CGA    761
                     |||.|  |.||.|||.|.||.||.||.|||||.|  ||||       .||
BL00942___yxl    721 AGCAAAGTCGTGTATCATAAGCCTTCACAAGCTGAATTTTATTTAACAGA    770

BSNT_05915___    762 GCTGCCTGATATACA--CGC-------TGGCCGGTCATTATT-AAGTGAC    801
                     .|.|.|||    |||  |||       ||||.|  .||..|| ||..|||
BL00942___yxl    771 TCGGTCTG----ACAGCCGCCGACTGTTGGCTG--AATGCTTGAACAGAC    814

BSNT_05915___    802 -TGTATCCGAAAGGGATTGACCGTCACCCGCTTTGAACAGAAAACGGAGT    850
                      .|||||       |||||..|||       ||||||||.||||||..||
BL00942___yxl    815 AAGTATC-------GATTGTTCGT-------TTTGAACAAAAAACGATGT    850

BSNT_05915___    851 CTCTAGAAGACGTCTATCTAAAGGTGGTGCACGC-ATGA    888
                     |..|.|||||..|.|||||.||||||.|| ..|| ||||
BL00942___yxl    851 CCTTGGAAGATATGTATCTGAAGGTGATG-GGGCTATGA    888


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