Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00248 and BL01025

See Amino acid alignment / Visit BSNT_00248 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:56
# Commandline: needle
#    -asequence dna-align/BSNT_00248___rpoA.1.5803.seq
#    -bsequence dna-align/BL01025___rpoA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00248___rpoA-BL01025___rpoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00248___rpoA-BL01025___rpoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00248___rpoA
# 2: BL01025___rpoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity:     842/945 (89.1%)
# Similarity:   842/945 (89.1%)
# Gaps:           0/945 ( 0.0%)
# Score: 3798.0
# 
#
#=======================================

BSNT_00248___      1 ATGATCGAGATTGAAAAACCAAAAATCGAAACGGTTGAAATCAGCGACGA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL01025___rpo      1 ATGATCGAGATTGAAAAACCAAAAATCGAAACGGTTGAAATCAGCGACGA     50

BSNT_00248___     51 TGCCAAATTTGGTAAGTTTGTCGTAGAGCCACTTGAGCGTGGATATGGTA    100
                     ||||||.|.||||||.||||||||||||||||||||||||||||||||||
BL01025___rpo     51 TGCCAAGTATGGTAAATTTGTCGTAGAGCCACTTGAGCGTGGATATGGTA    100

BSNT_00248___    101 CAACTCTGGGTAACTCCTTACGTCGTATCCTCTTATCCTCACTCCCTGGT    150
                     |||||.|||||||||||||||||||||||||.||||||||||||||||||
BL01025___rpo    101 CAACTTTGGGTAACTCCTTACGTCGTATCCTTTTATCCTCACTCCCTGGT    150

BSNT_00248___    151 GCCGCTGTAACATCAATCCAGATAGATGGTGTACTGCACGAATTCTCGAC    200
                     ||||||||||||||.|||||.|||||||||||||||||.|||||||||||
BL01025___rpo    151 GCCGCTGTAACATCGATCCAAATAGATGGTGTACTGCATGAATTCTCGAC    200

BSNT_00248___    201 AATTGAAGGCGTTGTGGAAGATGTTACAACGATTATCTTACACATTAAAA    250
                     .||.|||||||||||.||||||||||||||||||||||||.|||||||||
BL01025___rpo    201 GATCGAAGGCGTTGTTGAAGATGTTACAACGATTATCTTAAACATTAAAA    250

BSNT_00248___    251 AGCTTGCATTGAAAATCTACTCTGATGAAGAGAAGACGCTAGAAATTGAT    300
                     |.||||||.||||||||||||||||.||||||||||||||.||.||||||
BL01025___rpo    251 AACTTGCACTGAAAATCTACTCTGAAGAAGAGAAGACGCTTGAGATTGAT    300

BSNT_00248___    301 GTACAGGGTGAAGGAACTGTAACGGCAGCTGATATTACACACGATAGTGA    350
                     ||.||||||||||||..||||||.||.|||||||||||.|||||.|||||
BL01025___rpo    301 GTTCAGGGTGAAGGAGTTGTAACAGCTGCTGATATTACCCACGACAGTGA    350

BSNT_00248___    351 TGTAGAGATCTTAAATCCTGATCTTCATATCGCGACTCTTGGTGAGAATG    400
                     |||.|||||.||.||||||||||||||.||.|||||||||||..|.||||
BL01025___rpo    351 TGTTGAGATTTTGAATCCTGATCTTCACATTGCGACTCTTGGCCAAAATG    400

BSNT_00248___    401 CGAGTTTCCGAGTTCGCCTTACTGCTCAAAGAGGACGTGGGTATACGCCT    450
                     |||||||.|||||||||.|.||||||||||||||.||.||||||||.||.
BL01025___rpo    401 CGAGTTTTCGAGTTCGCTTAACTGCTCAAAGAGGTCGCGGGTATACACCA    450

BSNT_00248___    451 GCTGACGCAAACAAGAGAGACGATCAGCCAATCGGCGTGATTCCGATCGA    500
                     ||||||||.||.||.||||||||||||||.||.|||||.||.|||||.||
BL01025___rpo    451 GCTGACGCGAATAAAAGAGACGATCAGCCGATTGGCGTCATCCCGATTGA    500

BSNT_00248___    501 TTCTATCTATACGCCAGTTTCTCGTGTATCTTATCAGGTAGAGAACACTC    550
                     |||.||||.|||.||.||||||||.|||||||||||.||.|||||.||||
BL01025___rpo    501 TTCCATCTTTACACCTGTTTCTCGCGTATCTTATCAAGTTGAGAATACTC    550

BSNT_00248___    551 GTGTAGGCCAAGTTGCAAACTATGATAAACTTACACTTGATGTTTGGACT    600
                     ||||.||.||..||.||||||||||.||||||||.|||||.||.|||||.
BL01025___rpo    551 GTGTGGGTCAGATTACAAACTATGACAAACTTACGCTTGACGTATGGACA    600

BSNT_00248___    601 GATGGAAGCACTGGACCGAAAGAAGCAATTGCGCTTGGTTCAAAGATTTT    650
                     |||||||||||||||||.||||||||.|||||.|||||||||||||||||
BL01025___rpo    601 GATGGAAGCACTGGACCAAAAGAAGCTATTGCACTTGGTTCAAAGATTTT    650

BSNT_00248___    651 AACTGAACACCTTAATATATTCGTTGGTTTAACTGACGAAGCTCAACATG    700
                     .|||||||||||||||||.||.||.|||||.||.|||||||||||.||.|
BL01025___rpo    651 GACTGAACACCTTAATATTTTTGTCGGTTTGACCGACGAAGCTCAGCACG    700

BSNT_00248___    701 CTGAAATCATGGTTGAAAAAGAAGAAGATCAAAAAGAGAAAGTTCTTGAA    750
                     |||||||||||||.|||||||||||.|||||||||||.||||||||||||
BL01025___rpo    701 CTGAAATCATGGTAGAAAAAGAAGAGGATCAAAAAGAAAAAGTTCTTGAA    750

BSNT_00248___    751 ATGACAATTGAAGAATTGGATCTTTCTGTTCGTTCTTACAACTGCTTAAA    800
                     |||||.|||||||||.|.||||||||.||.|||||||||||||||||.||
BL01025___rpo    751 ATGACTATTGAAGAACTCGATCTTTCAGTCCGTTCTTACAACTGCTTGAA    800

BSNT_00248___    801 GCGTGCGGGTATTAACACGGTTCAAGAGCTTGCGAACAAGACGGAAGAAG    850
                     ||||||.||.||.||.||.||||||||.|||||||||||.||.|||||||
BL01025___rpo    801 GCGTGCAGGAATCAATACAGTTCAAGAACTTGCGAACAAAACTGAAGAAG    850

BSNT_00248___    851 ATATGATGAAAGTTCGAAATCTAGGACGCAAATCACTTGAAGAAGTGAAA    900
                     ||||||||||||||||.||.||.||.|||||.||.|||||||||||.|||
BL01025___rpo    851 ATATGATGAAAGTTCGCAACCTGGGCCGCAAGTCGCTTGAAGAAGTAAAA    900

BSNT_00248___    901 GCGAAACTAGAAGAACTTGGACTCGGACTTCGCAAAGACGATTGA    945
                     ||||||||.||||||||||||||.||.||||||||||||||||||
BL01025___rpo    901 GCGAAACTTGAAGAACTTGGACTTGGCCTTCGCAAAGACGATTGA    945


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