Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05355 and BL01065

See Amino acid alignment / Visit BSNT_05355 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:29
# Commandline: needle
#    -asequence dna-align/BSNT_05355___yvkC.1.5803.seq
#    -bsequence dna-align/BL01065.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05355___yvkC-BL01065.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05355___yvkC-BL01065.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05355___yvkC
# 2: BL01065
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3176
# Identity:    1464/3176 (46.1%)
# Similarity:  1464/3176 (46.1%)
# Gaps:        1234/3176 (38.9%)
# Score: 2622.5
# 
#
#=======================================

BSNT_05355___      1 ----------ATGTATTCTGTTTTATTTCGCCAGGCAGAAGAGTCCAGCC     40
                               |||||||..|.|||           ||..||| ||.|.|.
BL01065            1 ATGGGACACTATGTATTGGGCTTT-----------CATGAGA-TCGATCG     38

BSNT_05355___     41 AGCTG-------GCT----GGAGCAAAAGGAATGAATTTGATTAAATTGA     79
                     |.|.|       |||    ||||.||||||..||||.|||....|||||.
BL01065           39 AACCGATTTGCCGCTTATCGGAGGAAAAGGGCTGAACTTGGGCGAATTGT     88

BSNT_05355___     80 CCAAA---CACGGTCTTCC-TGTTCCGGACGGGTTTATTAT---------    116
                     |.|||   .|||| |.||| .||.||...|||.|||..|||         
BL01065           89 CAAAAATGGACGG-CATCCAAGTGCCTCCCGGTTTTTGTATAACAACAAA    137

BSNT_05355___    117 -----------------TC-----AAACGA--------------------    124
                                      ||     ||||||                    
BL01065          138 AGCATATGAAAAGATGATCGGTGAAAACGATAAGGTCAGTGAACAGATTG    187

BSNT_05355___    125 ATGCGCTCGCACGTTTTA----TGGAGGAC---AACCAG-----------    156
                     ||..|||..|.| |||||    ||.|||||   ||.|||           
BL01065          188 ATCAGCTGTCTC-TTTTAAAAGTGAAGGACAGAAAACAGATTAACGATCT    236

BSNT_05355___    157 ----CTTCAAGAGAC-------TAGTGAAAACGTCGAAAGCGGGATCATT    195
                         |||| |||..|       ||.|||||..|.|||||.||        
BL01065          237 TGCCCTTC-AGATCCGCAATGGTATTGAAAGGGCCGAAATCG--------    277

BSNT_05355___    196 TCTGGAACATTTTCGGATGAGCTGAAAGATGAGCTGACTAGTTCCTTTTA    245
                                  |.||.|||.|.|||||  |||.|           |||
BL01065          278 -------------CCGAAGAGATCAAAGA--AGCGG-----------TTA    301

BSNT_05355___    246 TAAGCTTAGAG---AATCATAT--------CGATCCGTAGCCGTGCGTTC    284
                     .||||     |   |.|||.||        ||||.|.||    ||||.||
BL01065          302 AAAGC-----GCTCACTCAAATGCTGGCGGCGATGCATA----TGCGGTC    342

BSNT_05355___    285 TTCG-TC---TGCTTCG---GAAGATTTAGAAGGC-----GCCTCATTCG    322
                       || ||   .|||.||   ||||||||     ||     |||||.||||
BL01065          343 --CGATCAAGCGCTACGGCAGAAGATTT-----GCCTCATGCCTCTTTCG    385

BSNT_05355___    323 CGGGTCAATATGAAACCTACTTAAATATCAAAACAGAGGAAGAGTTTCTG    372
                     |.||.||..|.||.||.||.||||||||.||     |||||.||    .|
BL01065          386 CCGGGCAGCAAGATACGTATTTAAATATAAA-----AGGAATAG----AG    426

BSNT_05355___    373 GCTAAAGTGAA-------AG--AATGCTGGGCCTCATTTTTTTCTGGGCG    413
                     ||.|...||||       ||  ||||||||||.|||.|.|||.|.|.|||
BL01065          427 GCGATCTTGAAGCATATCAGCAAATGCTGGGCTTCACTGTTTACAGAGCG    476

BSNT_05355___    414 GGTCAGCAGCTATAAGAAAAAAA-------TGAACAATCAAATCGCAGAG    456
                     ||.|...|.|||...||...|||       |||.|      |.||||.||
BL01065          477 GGCCGTGATCTACCGGATTCAAAACGGTTTTGACC------ACCGCAAAG    520

BSNT_05355___    457 --CCGTTAATGGGAATAGTCGTTCAG-----GGGCTGATC---GATTCAG    496
                       |..|||..||   |.|||||.|||     ||  ||.||   |||.|  
BL01065          521 TTCAATTATCGG---TCGTCGTCCAGCAGATGG--TGTTCCCGGATGC--    563

BSNT_05355___    497 AAATGTCAGGTGTTATCTTCAGCCGCA-ACCCTGTTAC--CCA-------    536
                         |||.||..||.|.||.| |.||| |.|||.||||  |||       
BL01065          564 ----GTCCGGCATTTTGTTTA-CGGCAGATCCTATTACATCCAACCGGAA    608

BSNT_05355___    537 ------------TGATG-ATAGAGAGCTTTTAATCAGCGCCAGCTACGGG    573
                                 ||||| |     ||||||            |||     
BL01065          609 GGTCACCTCGATTGATGCA-----AGCTTT------------GCT-----    636

BSNT_05355___    574 TTGGGTGAAGCTGTTGTTTCAGGAAGTGTTACCCCAGACACGTTCATTGT    623
                     |||||.||.||..||||.||.||.|..|||.|..||||||..|.||..||
BL01065          637 TTGGGAGAGGCGCTTGTATCTGGTACAGTTTCAGCAGACAACTACAAGGT    686

BSNT_05355___    624 TAATAA-------ATCTTCGTTTGAGATTCAGAA-----------AGAAA    655
                     |..|.|       |||          |||||.||           |||||
BL01065          687 TCGTGAAGGCGCGATC----------ATTCAAAAAACGATTTCCGAGAAA    726

BSNT_05355___    656 TAGGTGCAAAGGAAATCTA---CATGG--AGTCTGCGGCA----------    690
                     .||     |.||.|.||||   ..|||  || |.||||||          
BL01065          727 AAG-----ACGGCAGTCTATTCTTTGGAAAG-CGGCGGCACTGAGGCGCG    770

BSNT_05355___    691 -GAAG--GAA------TTGCTGAAAAAGAAACGAGTGAAGACATGCGCAG    731
                      ||||  |||      |..|.||||.||.||         ||||      
BL01065          771 CGAAGTCGAAGCGGGCTGCCGGAAAGAGCAA---------ACAT------    805

BSNT_05355___    732 CCGTTTTTGCCTTACAGATGAACAAGTGATTGAAT-TGGC-TGAAATCAC    779
                                |.|||||||||||   |||  .|| .||| ||||| .||
BL01065          806 -----------TAACAGATGAACA---GAT--CATCCGGCTTGAAA-AAC    838

BSNT_05355___    780 ----AAAAAAAACCGAAGACCTGTACGGATATCCTGTCGATATAGAATTT    825
                         ||..|.||.|||||.||..|.|||.|.|||....|||||.||||..
BL01065          839 TGGGAAGGAGAATCGAAGCCCATTTCGGTTTTCCGCAGGATATTGAATGG    888

BSNT_05355___    826 GGAATTGCTGATCATCAAATATACCTTCTGCA-AGCTCGCCCGATTACAA    874
                     .|..|.||||||....||.|.|.|.||.|.|| ||| ||.||.||.||.|
BL01065          889 TGTCTGGCTGATGGCGAATTTTTCTTTGTCCAGAGC-CGGCCTATAACGA    937

BSNT_05355___    875 CCATTG-------ATCAGGACAAAAAG-GCGGCAGAAGAAAAACGCAGCT    916
                      |||||       .||.|   |||.|| ||    ||.||.|     ||||
BL01065          938 -CATTGTTTCCTCTTCCG---AAACAGAGC----GATGACA-----AGCT    974

BSNT_05355___    917 TCATGATTACCGACACTGATATGAATGATTTCTGGC-TTAACATGGAGTC    965
                     ||..|..|          |||||..||   ||.||| |.|.||       
BL01065          975 TCGCGTCT----------ATATGTCTG---TCGGGCATCAGCA-------   1004

BSNT_05355___    966 TAATATTGA-AGGTCCGGTGAGTC------------CGTTATT----TTC    998
                      |||..||| ||..|||.|.|.||            ||||.||    ||.
BL01065         1005 -AATGATGACAGAACCGATCAATCCGCTTGGAATATCGTTTTTCGGGTTG   1053

BSNT_05355___    999 ATC----------------CTTCATCGTGCCGGCATTGGAA-------TA   1025
                     |||                |||    ||||||||   ||||       ||
BL01065         1054 ATCTCGGATTATGAGCTGACTT----GTGCCGGC---GGAAGGCTTTTTA   1096

BSNT_05355___   1026 TGGCTTGA--AGAAGA----GCA-----TGCA------AAAGT-TTCCGA   1057
                     |.|.||.|  |.|.||    |||     ||||      ||||| .|||  
BL01065         1097 TTGATTTATCACACGATTTGGCATCTTTTGCAGGGCGGAAAGTCGTCC--   1144

BSNT_05355___   1058 TTGGT--GTA-GTTGTTGATGAAGTAAAA-----CTTT-----ATCGCGG   1094
                         |  ||| |..|..||      ||||     ||||     ||.|||.
BL01065         1145 ----TCAGTACGGCGGGGA------AAAATGATCCTTTCATGCATAGCGC   1184

BSNT_05355___   1095 ACAT----ATTTATTCCAAAAACCAAGGTGGACAGCAGCCTCCTTCTGAA   1140
                     .|.|    ||||.||..|||          ||.||.||    |||.|.||
BL01065         1185 TCTTGTGAATTTTTTGAAAA----------GAAAGGAG----CTTGTCAA   1220

BSNT_05355___   1141 GA--CTGCGGCAAAG---AGCTTTTCCCGAT-TTTA---TCGGAGCATAT   1181
                     .|  ||||.| ||||   ||      |.||| ||||   |.||.||   |
BL01065         1221 AACCCTGCCG-AAAGGGAAG------CGGATGTTTAGATTAGGGGC---T   1260

BSNT_05355___   1182 GTA----TGACATCATCAATCACACATACCTCCC---------------T   1212
                     |.|    ||.|||..||           .||.||               .
BL01065         1261 GAAGGGCTGTCATGGTC-----------GCTGCCGGGTGATGCGCTGAAG   1299

BSNT_05355___   1213 TTTTACCGGACACTGGAC-CAGCTCGCA--CAAACTGAGCATACCGCAGA   1259
                     .|||||||||.|...||| |||.| |.|  |||||.|..|||   |..||
BL01065         1300 ATTTACCGGAAAAACGACACAGAT-GTAGTCAAACGGCTCAT---GTCGA   1345

BSNT_05355___   1260 AAGCGCA-----------------CTGGA-TGCTTTTCAAAAAC------   1285
                     |||||.|                 |||.| .||..||.||||||      
BL01065         1346 AAGCGGAAGCATCCATTCAAGAGGCTGAACAGCGATTGAAAAACGCATCG   1395

BSNT_05355___   1286 ---TAAAGGCCTTTTATCT-CACGGCTTAT-GAAGAGCACTTCAATATCG   1330
                        .|||.|    ||||.| |||.|   || ||||||.|  ||||     
BL01065         1396 GGTGAAACG----TTATTTGCACAG---ATAGAAGAGGA--TCAA-----   1431

BSNT_05355___   1331 TTTTCCCGCAAATCCTTTTAACAAACAAACTGCAAGCGATGTATCAGGAC   1380
                              |||..|||     .||.|||.|.|      |.|||     .
BL01065         1432 ---------AAAAGCTT-----GAAAAAAGTTC------TCTAT-----G   1456

BSNT_05355___   1381 ATTCAAGGAGAGTCCGAAAACGC--TCATT--------TTTATGAGATGC   1420
                     |||||  |||||     .|..||  |.|||        |||||   ||||
BL01065         1457 ATTCA--GAGAG-----CATGGCTGTAATTATGGTTGGTTTAT---ATGC   1496

BSNT_05355___   1421 ---TGACAG--------GAAAAATGAACAAATCACTGG-------AAACG   1452
                        |.||.|        ||||||||.|.||||..||.|       |||.|
BL01065         1497 CGTTTACTGGCTCAATCGAAAAATGGAGAAATGGCTTGGCGAAAAAAATG   1546

BSNT_05355___   1453 -------GACCGTTGCT-TATGGCTATT-TTCTATGGAAGTTCAGGAGAA   1493
                            .|||.||.|| .||.|.|||| |.|.|||     |||      
BL01065         1547 TCGCCGATACCCTTTCTCAATCGGTATTGTACAATG-----TCA------   1585

BSNT_05355___   1494 CCCGAACCTTCTGACCAT-----------TTTTGAAAACAACA-----AG   1527
                            |.||||| .||           |||||.|...|.||     .|
BL01065         1586 -------CATCTGA-AATGGGATTGGCGCTTTTGGATGTATCAGATGCTG   1627

BSNT_05355___   1528 CCTGA----AC----AGCTCCAGGAGAAATTAGAA----CAAACAGATGA   1565
                     ||.||    ||    ||.|.|||.||.|.||||.|    |.||.| ||  
BL01065         1628 CCAGAGGATACCCCGAGGTTCAGAAGTATTTAGCATATGCCAATA-AT--   1674

BSNT_05355___   1566 GGGGAGACACTTCCTGAAGAAC------------------GTC-------   1590
                        ||.||..||..||||||.|                  |||       
BL01065         1675 ---GAAACCTTTTTTGAAGATCTCAAACAGCTTGACGGCGGTCCCGCCTT   1721

BSNT_05355___   1591 --------CAT-----GAATT-CTTGCAAGAA-TACGG-ATG--------   1616
                             |||     |.||| ||||  |||| ||||| |||        
BL01065         1722 TATCGGCGCATTGCGGGCATTCCTTG--AGAAGTACGGCATGCGCTGCAC   1769

BSNT_05355___   1617 ----GAGATCTGTTAAAAGTCATGATCTGATTGAACAAATCTGGGTGGAA   1662
                         |||||| |.||.|| .||.||.|.|           ||||...|||
BL01065         1770 CGGTGAGATC-GATATAA-CCAAGACCCG-----------CTGGAGCGAA   1806

BSNT_05355___   1663 AATCCGTATTTCGCTCTGGCT--AAT-AT-----------TCAA-AATTA   1697
                     ..|||   ||.|..|||.|||  ||| ||           |||| ||||.
BL01065         1807 CGTCC---TTCCATTCTTGCTCCAATCATTTTGAGCAACATCAAGAATTT   1853

BSNT_05355___   1698 T--GTCCG------TAATGGCTATCATTTTGACAATG---AATTTCAGAA   1736
                     |  |.|||      .||.|||||  |.|||||..|.|   .|||   |.|
BL01065         1854 TGAGCCCGGCGCGCGAACGGCTA--AGTTTGAACAGGGGCGATT---GGA   1898

BSNT_05355___   1737 AACGAAAGAAAAACGAGAGAAATT--------------------------   1760
                     |.|| .|||||||.|||||..|||                          
BL01065         1899 AGCG-GAGAAAAAGGAGAGGGATTTGTTAAGCCGTCTGCAACAACTAAAG   1947

BSNT_05355___   1761 ------ATACAATGAATTCTTGGAAA-----ACATAGAAGATCCCGGTT-   1798
                           |.||||  ||     ||.||     |||.|||||||    |.| 
BL01065         1948 GGAGGCAGACAA--AA-----GGCAAAAAGGACAAAGAAGAT----GATC   1986

BSNT_05355___   1799 -------TGCGCACCGAATTTGA-CCGCTAT------TATC---AATGGA   1831
                            ||||    ||||||.| |.|||||      ||||   |||...
BL01065         1987 AGCGTGCTGCG----GAATTTTATCGGCTATCGGGAATATCCCAAATACG   2032

BSNT_05355___   1832 CACTG----AACTC---TGCAAATATAA--AAGATGATCACCACTTTTAT   1872
                     |.|||    |||.|   |.||.||||||  |||          |.||.||
BL01065         2033 CTCTGATCAAACGCTATTTCATATATAAGGAAG----------CGTTGAT   2072

BSNT_05355___   1873 -ATTGACGCCATGCTGGATGCCAAGGCGAGAATCTTTCTGCTGAAGATAG   1921
                      |..||.|||  ||||                |.||.|.||..|||| ||
BL01065         2073 GAAAGAAGCC--GCTG----------------TTTTACAGCAAAAGA-AG   2103

BSNT_05355___   1922 GTGAATTGCTGGCGGAAAACGGTGTCATTCAAGATCGTGAGGACCTTTGG   1971
                     .|||  |.|..|||                |||     |||||    |..
BL01065         2104 CTGA--TACAAGCG----------------AAG-----GAGGA----TAT   2126

BSNT_05355___   1972 TTTTTATATGAC----GACGAAGTGGAACAAGCGCTTCTTCAC---CCTG   2014
                     ||.||||.||.|    ||.|||.||.||.|||| |.|.|.|||   || |
BL01065         2127 TTATTATTTGTCCTTTGATGAATTGAAAGAAGC-CGTGTGCACAAACC-G   2174

BSNT_05355___   2015 TATCCCTGCAAGAAAAGGCTGAAAAACGCAGACAGATTTTTCATGAGTAT   2064
                     |.||..||           ||||.|        ||||             
BL01065         2175 TCTCGATG-----------TGAAGA--------AGAT-------------   2192

BSNT_05355___   2065 GAGCTGGCCCAAGCCCCTGCCTACCTCGGCACCCCGACAAAAGAACAGCT   2114
                                                       |||..||||||.|||.
BL01065         2193 ----------------------------------CGAGGAAAGAAAAGCG   2208

BSNT_05355___   2115 CAA-AGCAGC----TGAAGAAATTGTCGGCGCTGTGATAGAGGATGA---   2156
                     .|| |.|.||    |||| ||||||.||.|.|.|.||   |..||||   
BL01065         2209 GAATATCGGCATTATGAA-AAATTGACGCCTCCGCGA---ATCATGACTT   2254

BSNT_05355___   2157 -AAAA---------AACA-CAGAGAATCATATTTTTGGCATTGCGGCATC   2195
                      |.||         |.|| |.|||||           ||.|||.||.|||
BL01065         2255 CAGAAGGCGAGGTCATCACCGGAGAA-----------GCCTTGGGGGATC   2293

BSNT_05355___   2196 AAGCGGCATTGCGACAGG---------------TCCGGTGAAAATCATTC   2230
                     |     ||||.||.||||               |||.||    .||| ||
BL01065         2294 A-----CATTCCGGCAGGAGCGTTGGCGGGCGTTCCTGT----TTCA-TC   2333

BSNT_05355___   2231 GGG-------------ACGCCAA---TGAATTTTCTCAATTCG-----CG   2259
                     |||             |.|.|||   |||   ||||.||.|.|     .|
BL01065         2334 GGGGATCATCGAAGGAAGGGCAAGAGTGA---TTCTGAAATTGGAGGAAG   2380

BSNT_05355___   2260 CC-----------TGGGGACGTACT--------CGTTTGCAAGAT--GAC   2288
                     ||           .|||||..|.||        |.|||.| ||||  ||.
BL01065         2381 CCGATATCGAAGAGGGGGATATCCTTGTCACGCCTTTTAC-AGATCCGAG   2429

BSNT_05355___   2289 C---ACACCGCTATGGACCAGCCTGTTTCAAGACGCCAAAGCGATAATTA   2335
                     |   ||||||.|||        .|||.||||    .|||||...|..|.|
BL01065         2430 CTGGACACCGTTAT--------TTGTCTCAA----TCAAAGGTTTGGTGA   2467

BSNT_05355___   2336 CAGACACAGGCGGCATTTTGTCTCACGCTGCGATTATTGCCCGTGAATAC   2385
                     |.||....||||||.|..||.|.||||..||..|||||||.||.||||||
BL01065         2468 CTGAAGTGGGCGGCCTCATGACACACGGCGCTGTTATTGCGCGGGAATAC   2517

BSNT_05355___   2386 GGCATTCCAGCCGTTCTCG-------GCACACGCACGGCAACCGAAAG-A   2427
                     ||..||||.||.||..|.|       |||..||        .|||||| |
BL01065         2518 GGGCTTCCGGCGGTGGTGGGGGTTGAGCATGCG--------ACGAAAGAA   2559

BSNT_05355___   2428 CTGCGAGACGGTGACATCATCACTGTTGACGGTAGCAGCGGCA--AAATC   2475
                     .|...||||||..|.|..||||...||.||||    |.|||.|  |.|| 
BL01065         2560 ATTAAAGACGGACAGAAGATCAGGATTAACGG----ATCGGAAGGATAT-   2604

BSNT_05355___   2476 ACAGTTGTCAGCCGGTCCT-GA----   2496
                        ||||..|     |.|| ||    
BL01065         2605 ---GTTGAAA-----TACTCGAATGA   2622


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