Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04039 and BL01150

See Amino acid alignment / Visit BSNT_04039 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_04039___yrbC.1.5803.seq
#    -bsequence dna-align/BL01150___yrbC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04039___yrbC-BL01150___yrbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04039___yrbC-BL01150___yrbC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04039___yrbC
# 2: BL01150___yrbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 822
# Identity:     528/822 (64.2%)
# Similarity:   528/822 (64.2%)
# Gaps:         138/822 (16.8%)
# Score: 1816.0
# 
#
#=======================================

BSNT_04039___      1 TTGCATCAGCGAACAATTCCCATTAAAGTGTACATAGAAAATGTAAAAGA     50
                                                                       
BL01150___yrb      0 --------------------------------------------------      0

BSNT_04039___     51 AGGTGAAAACATGGCAGGCCATTCCAAGTGGAAAAACATTCAAAAAAGAA    100
                               |||||.||||||||.||.||||||||.|||||.|.|.|||
BL01150___yrb      1 ----------ATGGCTGGCCATTCTAAATGGAAAAATATTCAGAGACGAA     40

BSNT_04039___    101 AAAATGCACAGGATGCAAAGCGCGGCAAAATATTTATGAAGCTTGCAAAA    150
                     |||||||.||.|||||.||.|||||||||||.||.|||||||||||.|||
BL01150___yrb     41 AAAATGCCCAAGATGCTAAACGCGGCAAAATTTTCATGAAGCTTGCCAAA     90

BSNT_04039___    151 GAAATCTATGTGGCAGCGAAAGAAGGCGGAGCGGATCCAGAAGCAAATTC    200
                     |||||.|||||.||.|||||||||||.|||.|.|||||.|||.|.||..|
BL01150___yrb     91 GAAATATATGTAGCCGCGAAAGAAGGGGGACCAGATCCCGAATCTAACGC    140

BSNT_04039___    201 AGCATTGCGTCTTGTCATCGAAAAAGCAAAAGGCGCCAATATGCCGAATG    250
                     |....|||||||.||||||||.|||||.|||...||.||.|||||.||||
BL01150___yrb    141 AAGTCTGCGTCTCGTCATCGATAAAGCCAAAAATGCAAACATGCCAAATG    190

BSNT_04039___    251 AAAATATAGATCGGGCCATTAAAAAAGCTGCGGGAGGCCAAGATGGAAGC    300
                     |.||.||.||.||.|||||.|||||||||.|.||..||||.|||||||..
BL01150___yrb    191 ACAACATCGACCGCGCCATCAAAAAAGCTTCCGGCAGCCAGGATGGAAAA    240

BSNT_04039___    301 AGTTATGAAGAAATCACCTATGAAGGCTACGGCCCTTCAGGGATTGCCGT    350
                     ||.|||||.|||||.||.|||||.||||||||.||....||..|.||.||
BL01150___yrb    241 AGCTATGAGGAAATTACGTATGAGGGCTACGGACCAAGCGGTGTGGCTGT    290

BSNT_04039___    351 CATGGTTGAATGCGTAACAGATAATAAAAACCGAACGGCGTCAAATGTGC    400
                     ||||||..||||..|.|||||||||||||||||.||||||.|||..||..
BL01150___yrb    291 CATGGTCAAATGTTTGACAGATAATAAAAACCGGACGGCGACAAGCGTCA    340

BSNT_04039___    401 GGACAGCCTTTAATAAAAATGGCGGAAGTCTGGGAGAAAGCGGATGTGTA    450
                     |.||.||.||.|..|||||.|||||.||..|||||||||..|||||.|| 
BL01150___yrb    341 GAACCGCTTTCAGCAAAAACGGCGGCAGCTTGGGAGAAACAGGATGCGT-    389

BSNT_04039___    451 GCCTTTTTA----TTTGAACGAAAGGGGTTCATTACGATAGACCGTACTG    496
                        ||.|||    ||.||.||.||.||.|..|||.|.||.||.|||...|
BL01150___yrb    390 ---TTCTTATATGTTCGACCGGAAAGGATATATTGCAATCGAACGTGAAG    436

BSNT_04039___    497 AACGGCAAATAGAAGAAGATGAGCTCATGCTTGATGTGCTTGAAGCAGGA    546
                     |.|...|.|||||.|||||.|||.|.||||||||.||..||||.||.||.
BL01150___yrb    437 ATCTTGAGATAGATGAAGAAGAGTTTATGCTTGAGGTCATTGATGCCGGT    486

BSNT_04039___    547 GGAGAAGAGCTGCGAATTGAA------GAAAACCTATATGAGGTTTTCAC    590
                     |..||.||||      |||||      |||.|.||.|..|||.|||..||
BL01150___yrb    487 GCTGAGGAGC------TTGAAACGAGCGAAGAGCTGTTCGAGATTTATAC    530

BSNT_04039___    591 AGAGCCTGAGCATTTTGAAGAGGTGAA-AACAGC--------CCTCGAAT    631
                     ||||||.||.||.||||||||.||||| ||.|||        .|.||..|
BL01150___yrb    531 AGAGCCCGAACAGTTTGAAGAAGTGAAGAAAAGCTTGGAGGAGCGCGGCT    580

BSNT_04039___    632 -CAA------AATATC--TAATTTCTTCGGCGGAGGTGACCATGCTTCC-    671
                      |||      ||.|||  .||||               ||.|||.|||| 
BL01150___yrb    581 ACAAGCTGGCAACATCCGAAATT---------------ACAATGGTTCCG    615

BSNT_04039___    672 CAATACCTATGCAGAAGCCGATGA------TCAGG---CTGTTGAGAAGC    712
                     ||| |||||||||||||.||||||      |||||   ..||.||.||||
BL01150___yrb    616 CAA-ACCTATGCAGAAGTCGATGAAGCGCTTCAGGAAAAAGTCGAAAAGC    664

BSNT_04039___    713 TGGAAACATTAATAGACGTCCTTGAAGATGACGATGATGTTCAAGAAGTG    762
                     |     ||||    |||||.|||||||||||.||.|||||.||.||||||
BL01150___yrb    665 T-----CATT----GACGTGCTTGAAGATGATGACGATGTGCAGGAAGTG    705

BSNT_04039___    763 TATACAAACTATCGCTCATAA-    783
                     |||||.||    ||.||||.| 
BL01150___yrb    706 TATACGAA----CGTTCATTAA    723


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