Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03130 and BL01303
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:48
# Commandline: needle
# -asequence dna-align/BSNT_03130___yocH.1.5803.seq
# -bsequence dna-align/BL01303.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03130___yocH-BL01303.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03130___yocH-BL01303.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03130___yocH
# 2: BL01303
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 901
# Identity: 594/901 (65.9%)
# Similarity: 594/901 (65.9%)
# Gaps: 131/901 (14.5%)
# Score: 1953.5
#
#
#=======================================
BSNT_03130___ 1 ATGAAGAAGACGATTATGTCCTTTGTGGCAGTTGCTGCACTTTCAACAAC 50
||||||||||||.|||||||||||||.||||||||.|||.|.||..||||
BL01303 1 ATGAAGAAGACGTTTATGTCCTTTGTTGCAGTTGCAGCATTATCTTCAAC 50
BSNT_03130___ 51 TGCATTCGGAGCTCACGCTTCTGCAAAAGAAATTACGGTGCAAAAGGGTG 100
||||||||||||....||.||||||||||||.|.||.||.|||||.||||
BL01303 51 TGCATTCGGAGCGAGTGCCTCTGCAAAAGAAGTAACAGTCCAAAAAGGTG 100
BSNT_03130___ 101 ATACGCTCTGGGGAATCTCTCAGAAAAATGGAGTGAACCTAAAGGACTTA 150
|.||.||.|||||||||||.||.|||.|.||.||.||.||..||||||||
BL01303 101 ACACCCTTTGGGGAATCTCGCAAAAACAAGGGGTAAATCTGCAGGACTTA 150
BSNT_03130___ 151 AAAGAATGGAACAAGTTAACTTCTGATAAAATCATTGCAGGAGAAAAACT 200
|||||||||||..||.|..|.|||||....||.|||.|.|||.||||.||
BL01303 151 AAAGAATGGAATCAGCTTTCCTCTGACTTGATTATTCCGGGACAAAAGCT 200
BSNT_03130___ 201 GACCATTTCT---------TCAGAAGAAA--CAACCACGACTGGGCAATA 239
||.|.||||| .||||||||| .|| |||||
BL01303 201 GAACGTTTCTGAAAAACAGACAGAAGAAAAGAAA-----------CAATA 239
BSNT_03130___ 240 TACAATTAAAGCGGGAGATACGCTTTCTAAGATTGCTCAAAAATTCGGCA 289
|||.||||||..||||||.||.||.|..||.||.||.||||||||||||.
BL01303 240 TACCATTAAAAAGGGAGACACTCTCTGGAAAATCGCCCAAAAATTCGGCG 289
BSNT_03130___ 290 CGACAGTCAACAACCTGAAAGTTTGGAATAACTTAAGCTCTGACATGATC 339
...||||.||..||||.|||..||||||.|||.|||..||.||.||.||.
BL01303 290 TTTCAGTGAATGACCTTAAAAATTGGAACAACATAAAATCAGATATCATT 339
BSNT_03130___ 340 TATGC---TGGATC---AACTCTTTCAGTAAAAGGTCAGGCAACAG--CA 381
||..| |..||| |||| ||..|.||.|||||.||.| ||
BL01303 340 TACCCGAATACATCCATAACT------GTTGACGGACAGGCGACGGTCCA 383
BSNT_03130___ 382 GCAAACACAGCTACTGAGAATGCGCAAACAAACGCACCTCAAGCTGCGCC 431
| |||.|||.| ||||| |||| ||.
BL01303 384 G--------GCTGCTGCG---GCGCA---------ACCT--------GCG 405
BSNT_03130___ 432 AAAACAAGAG---GCTGTGCAAAAAGAGCAACCTAAA--CAAGAA-GCTG 475
.|||||| || ||.||.||||||| ||.|.||| |.|||| ||||
BL01303 406 GAAACAA-AGCCTGCCGTACAAAAAG---AAGCGAAAGTCGAGAAGGCTG 451
BSNT_03130___ 476 ----TACAACAGCAACCTAAACAAGAAACAAAAGCTGAGGCAGAAACTTC 521
|.|..|.|| ||||||.||.||||.|.||.|.| ||||
BL01303 452 CGCCTGCCCCTGC-ACCTAAGCAGGAAAAAGAACCGG---------CTTC 491
BSNT_03130___ 522 TGTTAACACAGAAGAGAAGGCTGTTCAATCAAATACAAATAATCAAGAAG 571
|.||||||.|..|| .||| |||
BL01303 492 --------------------CCGTTCAAACGTAT-------CTCA--AAG 512
BSNT_03130___ 572 --CTTCAAAAGAACTAACAGTTACTGCTACTGCTTACACTGCTAACGACG 619
||.|.||||||||.||.|||||.||.||.||.||||||||.||.||||
BL01303 513 CACTGCCAAAGAACTGACGGTTACAGCAACGGCATACACTGCCAATGACG 562
BSNT_03130___ 620 GCGGCATTTCCGGCGTTACAGCTACAGGCATTGA-CTTA-----AATAAG 663
||||.||..|.|||||.|||||.||.||.||.|| ||.| |||||
BL01303 563 GCGGTATGACAGGCGTGACAGCCACGGGTATCGATCTGAAGGCCAATAA- 611
BSNT_03130___ 664 AACCCGAACGCGAAAGTTATTGCGGTTGATCCTAATGTAATTCCGCTAGG 713
.|||||.||.|||||||||||.|||||.||.|||||.|||||.||
BL01303 612 -----AAACGCCAAGGTTATTGCGGTGGATCCAAACGTAATCCCGCTTGG 656
BSNT_03130___ 714 TTCTAAAGTTTATGTTGAAGGCTACGGGGAAGCAACAGCAGGAGACACTG 763
.||.||.||.|||||.|||||||||||.|||||.||.||.|..||.||.|
BL01303 657 ATCCAAGGTGTATGTGGAAGGCTACGGAGAAGCGACCGCTGCCGATACCG 706
BSNT_03130___ 764 GCGGCGCTATTAAAGGAAATAAAATCGACGTATTTGTACCAAGTAAAAGT 813
||||.||.||.||.||.||.|||||||||||||||||.|||||.|||...
BL01303 707 GCGGTGCGATCAAGGGGAACAAAATCGACGTATTTGTTCCAAGCAAATCC 756
BSNT_03130___ 814 GATGCATCTAATTGGGGCGTCAAAACTGTAAATGTTAAAATCTTAAACTA 863
|..|||...||.||||||||.|||||.||.||.||||||.|.|||||.||
BL01303 757 GCAGCAAAAAACTGGGGCGTTAAAACGGTTAAAGTTAAAGTTTTAAAATA 806
BSNT_03130___ 864 A 864
|
BL01303 807 A 807
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