Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04501 and BL01417
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:42
# Commandline: needle
# -asequence dna-align/BSNT_04501___glgD.1.5803.seq
# -bsequence dna-align/BL01417___glgD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04501___glgD-BL01417___glgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04501___glgD-BL01417___glgD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04501___glgD
# 2: BL01417___glgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1079
# Identity: 697/1079 (64.6%)
# Similarity: 697/1079 (64.6%)
# Gaps: 97/1079 ( 9.0%)
# Score: 2041.5
#
#
#=======================================
BSNT_04501___ 1 GTGTTCAATAATCAAATGTTAGGTGTTATAGATG-------AAACCACAT 43
.|.||||||||||||||.||..||||.|||| |||||
BL01417___glg 1 ---ATGAATAATCAAATGTTGGGAATTATTGATGCAGCTGTAAACC---- 43
BSNT_04501___ 44 ATAAGCATTCTCTTCAGGATTTAACAGCACAG-CGGTCGCTCGGGGCGAT 92
||||.|||||||||||.|||||.|| |.| ||.|||.||||.||..|
BL01417___glg 44 ---AGCACTCTCTTCAGGACTTAACGGC-CGGCCGCTCGATCGGAGCCGT 89
BSNT_04501___ 93 CCCTTTTGCCGGCAGGTACCGACTGATTGATTTTATGCTTTCCAACATGG 142
.||.|||||.||.||||||||.|||||.||||||..|.|.||...|||||
BL01417___glg 90 TCCGTTTGCAGGAAGGTACCGGCTGATCGATTTTGCGTTGTCAGGCATGG 139
BSNT_04501___ 143 TGAATGCGGATATTAGGAGTGTTGCAAT-TTTTCCGAAGTATCGTTACCG 191
|..||||.|..|||.|||||||.||..| ||.||| ||||..|..|||||
BL01417___glg 140 TTCATGCAGGCATTCGGAGTGTCGCTGTATTCTCC-AAGTCCCCGTACCG 188
BSNT_04501___ 192 TTCGCTCATGGATCACCTTGGGGCGGGTAAAGAATGGGATTTGCATCGGA 241
.||..|.|||||.||..|.||..||||.|||||.||||||||..|..|||
BL01417___glg 189 CTCCTTGATGGACCATTTAGGATCGGGAAAAGAGTGGGATTTAAACAGGA 238
BSNT_04501___ 242 AAAAGGACGGCCTCTTTTTTTTCCCGTCTCCCCATCTTCATCACGAATAC 291
|||.|||.|||||.||.|||.|.||.|||.|.|.||..|||.|.||..|.
BL01417___glg 239 AAAGGGAGGGCCTTTTCTTTCTTCCATCTTCACTTCCCCATGATGAGCAT 288
BSNT_04501___ 292 GATGAATTCGGTTCCTTTCGCCAGTTTTCGGACCATCTAGATTACTTCCA 341
|.||...|.||.||.|||||.||.|||.||||.|||||.|||||.||.||
BL01417___glg 289 GTTGGGCTTGGATCGTTTCGGCAATTTGCGGAGCATCTCGATTATTTTCA 338
BSNT_04501___ 342 CAGAAGCACTCAGCAATATGCTGTAATCTCCAACAGCCATACCGTATGCA 391
.|||||||||||.|||||||||||..|..|.||.|||.||||.||..|..
BL01417___glg 339 AAGAAGCACTCAACAATATGCTGTTGTGGCAAATAGCTATACGGTCGGTC 388
BSNT_04501___ 392 ACATTCAATTTCAATATGTGCTGAAACGCCATCAGGAGGTTGGCTGCGAC 441
||||||..||||||.|.|||||.||||..||.|..||....||.||.||.
BL01417___glg 389 ACATTCCTTTTCAAGAAGTGCTCAAACAACACCTTGAATCCGGGTGTGAT 438
BSNT_04501___ 442 GTCACCGAGGTATTTCAGGACGGCCAGTCGCTGCAAATCTATATCATGTC 491
.|.||.||..|.|.|||.||.||..||.|..|...|||.| |||||
BL01417___glg 439 CTGACTGAAATTTGTCACGAAGGAAAGCCTTTAGGAATGT-----ATGTC 483
BSNT_04501___ 492 AACAACGCTTTTAAAGGATCTGATCTACGGACATAGTGAAA--------- 532
|..|| .|||..||||.|.| .|||.||.||..||
BL01417___glg 484 ACTAA-------GAAGAGTCTGTTGT-GGGAGATGGTTGAAGGGCATTGC 525
BSNT_04501___ 533 ----AAGGCTATAAAACCATTC------AGGAGGCTGTTGAAAAG----- 567
|||| |..|||.|| ||.||.|||..|.||||
BL01417___glg 526 CCTGAAGG-----AGCCCAATCTTTTGAAGAAGTCTGCCGGAAAGAGCGC 570
BSNT_04501___ 568 GAATCT---TCCGCCCTGACCATTTGCCCTTATGAATATTCAGGTTATGC 614
|..||| |||| |.|.|| || |||||..|.||.||.|||.|
BL01417___glg 571 GGCTCTCTATCCG---TCAACA---GC---TATGAGCACTCGGGATATAC 611
BSNT_04501___ 615 CGCTGTCATTGATTCGGTGGAAAAATA---TTATACCCACAGTATGGAGC 661
|||.||.||.|||||....||||..|| ||.| ||.|||.||.|.|
BL01417___glg 612 CGCCGTGATCGATTCCCCCGAAAGCTACCTTTTT---CATAGTTTGAACC 658
BSNT_04501___ 662 TCATTCAGCCTCGT-TTTTGGCAGCAGGTGTTT----TTGCCGCAGCAGC 706
|.||||||||| || ||||||.||||.||.||| |.|.| ||||
BL01417___glg 659 TTATTCAGCCT-GTGTTTTGGGAGCAAGTCTTTCATATGGGC----CAGC 703
BSNT_04501___ 707 CGATCTATACAAAAGTGAAGGATGAGCCGCCTACGAAATACGGAAAGCAC 756
|..||||.||||||.|.||..|.||.||.|||...|||||||..||..||
BL01417___glg 704 CTGTCTACACAAAAATAAAAAACGATCCTCCTGTAAAATACGCTAAAAAC 753
BSNT_04501___ 757 AGCACTGTCAAAAATTCTTTGGTGGCAAACGGCTGTGTGCTTGAAGGAGA 806
||||..||.||..|.||..|..|.||.||.||.||.||..|.|||||.||
BL01417___glg 754 AGCAGGGTAAAGCAATCGATTATCGCTAATGGGTGCGTAATCGAAGGTGA 803
BSNT_04501___ 807 GGTTGAAAACTGCATTTTGTTCAGGGCGGTCCATGTCGGAAAGGGAACAA 856
||||||.||.|...|.||||||||.|.|||.||.||.|||||.|||||||
BL01417___glg 804 GGTTGAGAATTCGGTCTTGTTCAGAGGGGTTCACGTAGGAAAAGGAACAA 853
BSNT_04501___ 857 AGCTGAAAAACTGTATTATTATGCAAAAAACGCAGATTGGAGAGGATTGT 906
...|.||||||.|..||.|.|||||||||||...|||.|||||..|.||.
BL01417___glg 854 CCATCAAAAACAGCGTTGTCATGCAAAAAACAAGGATCGGAGAAAACTGC 903
BSNT_04501___ 907 CTTCTTGAGCAGGTCATTTCGGATAAGGACGTTAAAATCGGCAAGGCGA- 955
|..||||||||.|||||.|..||.||||||||.|||||||||.|....|
BL01417___glg 904 CGGCTTGAGCACGTCATCTGCGACAAGGACGTCAAAATCGGCCATCATAT 953
BSNT_04501___ 956 CGGAAGCTGCAGGAACAGCTGAGCAGCCGCTT--GTATTAAGAAAAGGTT 1003
||.||..|.|.|.|.|| |||||..|| ||| .||||||.||||||..
BL01417___glg 954 CGAAATGTCCGGCACCA--TGAGCCTCC-CTTTCATATTAAAAAAAGGAG 1000
BSNT_04501___ 1004 TGGTGCAAGGAGAGCTGATGAATTCTTGA 1032
...|.|||||||.|||||||||.||||||
BL01417___glg 1001 CCATACAAGGAGCGCTGATGAACTCTTGA 1029
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