Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00547 and BL01813

See Amino acid alignment / Visit BSNT_00547 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence dna-align/BSNT_00547.1.5803.seq
#    -bsequence dna-align/BL01813___ycgH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00547-BL01813___ycgH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00547-BL01813___ycgH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00547
# 2: BL01813___ycgH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity:     344/1370 (25.1%)
# Similarity:   344/1370 (25.1%)
# Gaps:         901/1370 (65.8%)
# Score: 1018.0
# 
#
#=======================================

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg      1 ATGAAACGACAAGCGAAAAAAGGAGATTTAAAATGGTGGCAGCTGTCCAT     50

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg     51 GATCGGGGTCGGCTGCACAATTGGAACGGGGTTTTTCCTCGGCTCAAGCA    100

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    101 TCGCGATTAAGAAAAGCGGCTTTTCCGTATTAGCCGCCTTTCTTCTTGCT    150

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    151 GCCCTTGGCACTTTTCTTGTTTTTCAGCAGCTGGCGAAATTAACGGCAGA    200

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    201 TCATCCTGTTGAAGGGTCTTTTTGTTCTTACGCCAGAGAGGCCTTCGGCA    250

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    251 ATTGGGCGGGGTTTAGCAATGGCTGGGTCTACTGGTCATCGGAAATGCTG    300

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    301 ATCATCGGGAGCCAGTTGACAGCGATTTCCCTGTTTACGCGCCATTGGTT    350

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    351 TAACGAGATTCCGCTGTGGGTGTTCGCCTCTATTTATGCGATTCTCGGAT    400

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    401 TGATCGTCATTTTCACAGGGCGCAGCAGCTTTGAAAAAACGGAAAACATA    450

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    451 TTGGCCGTGTTGAAAACGGCGGCCATTTTAATGTTTATCATCATCGCTGT    500

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    501 CTTGGCATTGTGCGGGCTGCTGCCTGGAAAAACGCCTGAAGTGCAGTTCC    550

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    551 CTGACCGGGTTCACGAATTGTTTCCTTTCGGCTTTATGGGATTGTGGACG    600

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    601 GGGTTGATTTATACATTTTACGCTTATGGAGGAATCGAAGTCATGGGTCT    650

BSNT_00547         0 --------------------------------------------------      0
                                                                       
BL01813___ycg    651 GATGGCGATTCACTTAAAAGACCCGAAGGATTCATCAAAGTCAGGCAGCC    700

BSNT_00547         1 --ATGCTGGCGACGCTGGCGATTATTTATATCATTTCAATCGGGCTTGCT     48
                       |||||....||.||.||..|..|.||..||.|.||.||||||||.||.
BL01813___ycg    701 TGATGCTCATAACCCTTGCTGTGGTCTACGTCGTATCGATCGGGCTGGCC    750

BSNT_00547        49 CTGCTTTTGGTTCCGTTACACGCG-----TTTACTGAACAGGACAGTCCG     93
                     .||||..|.||.|     ||||||     ||.||.||||||.||||.|||
BL01813___ycg    751 ATGCTCCTTGTAC-----CACGCGGAACATTCACCGAACAGAACAGCCCG    795

BSNT_00547        94 TTCATTACATCATTAAAAGGATATAACCTTGAGATCATCCTTGATATATT    143
                     ||.|||||.||||||||||..|.|.|.||.||..|.|||.|.|||||.||
BL01813___ycg    796 TTTATTACGTCATTAAAAGACTTTCATCTCGATTTGATCATGGATATTTT    845

BSNT_00547       144 TAACGGGATTTTCATCATCGCCGGGTTCTCGACCCTTGTCGCTTCGCTTT    193
                     .|||||.|||||.||.||.|||||.||.||.||.||...||||||.||.|
BL01813___ycg    846 CAACGGCATTTTTATTATTGCCGGTTTTTCAACGCTGACCGCTTCCCTGT    895

BSNT_00547       194 TTGCCGTTACGACATTGCTTTGTACAATGGCTGATGACGGCGACGCGCCG    243
                     |.|||||.||.|||.||.|..|.||||||||..|..||||.||.||.|||
BL01813___ycg    896 TCGCCGTCACCACACTGATGGGAACAATGGCGAAAAACGGGGATGCACCG    945

BSNT_00547       244 AAATGCTTTACTCTAAAGG--AAGGCAAAAAAATATGCTGGCCGGCACT-    290
                     ...||||||.|...|||.|  |||||  .|||.|||..||||||||||| 
BL01813___ycg    946 GCCTGCTTTGCCAAAAAAGAAAAGGC--GAAAGTATCGTGGCCGGCACTC    993

BSNT_00547       291 --TCTGAC-GTTTGCGGGGCTTGTCCTC------TCCATTATTCTGTCGT    331
                       .||||| ||       |||.||.|||      |||||..|..|||||.
BL01813___ycg    994 GGCCTGACAGT-------GCTCGTTCTCGCTGCTTCCATCGTCTTGTCGC   1036

BSNT_00547       332 TAGTGCTGCCTAAAAACATTTATGAGCATATGACAACAGCTGCGGGGCTT    381
                     |..|..||||.||..|..|||||||.||.|||||.||.||.|| ..||||
BL01813___ycg   1037 TCATTTTGCCGAAGCAGCTTTATGAACACATGACGACGGCCGC-CAGCTT   1085

BSNT_00547       382 -ATGCT--TTTATACACTTGGCTGTTTATCATGTTCTCCAGCAAAAAGCT    428
                      |||||  |.|||| || |||.||||||||.||.|.||||||||||||||
BL01813___ycg   1086 GATGCTGCTCTATA-AC-TGGATGTTTATCCTGCTTTCCAGCAAAAAGCT   1133

BSNT_00547       429 GACTGATCCCGAGGGCATGGGAAAAACGCAAAT-----TTATTGTTCTGA    473
                     .||                  ||||.||.||||     ..|.|||.|.||
BL01813___ycg   1134 CAC------------------AAAACCGAAAATGAAAGGGAATGTCCAGA   1165

BSNT_00547       474 TTG---CTGCG------------------GCTGTGTCCGGTACATTGTTT    502
                     |||   |.|||                  ||.||.||.|||||.||.|||
BL01813___ycg   1166 TTGTCACAGCGCTCGTCCTGATTTTGTTCGCCGTTTCGGGTACGTTATTT   1215

BSNT_00547       503 GA------------------------------------------------    504
                     ||                                                
BL01813___ycg   1216 GAAAAAAACAGCAGACCCGGTTTTTTTGTGAGCCTTCTCTTTCTTGCCGT   1265

BSNT_00547       504 --------------------------------------------------    504
                                                                       
BL01813___ycg   1266 TATTGCTGCTGTGACGATGCTCATGAAAAAAAAGTGGGCGGATCAGGAAG   1315

BSNT_00547       504 --------------------    504
                                         
BL01813___ycg   1316 AGAAAAACGGGCAGACATGA   1335


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