Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03971 and BL02028

See Amino acid alignment / Visit BSNT_03971 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:00
# Commandline: needle
#    -asequence dna-align/BSNT_03971___yrrM.1.5803.seq
#    -bsequence dna-align/BL02028___yrrM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03971___yrrM-BL02028___yrrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03971___yrrM-BL02028___yrrM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03971___yrrM
# 2: BL02028___yrrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 697
# Identity:     466/697 (66.9%)
# Similarity:   466/697 (66.9%)
# Gaps:          77/697 (11.0%)
# Score: 1471.5
# 
#
#=======================================

BSNT_03971___      1 GTGACTGACCGGTATGAACA--AATAAATGA----CTATAT--AGAAGCA     42
                     ||||      .|..||.|||  ||.||.|||    ||||.|  |.|||| 
BL02028___yrr      1 GTGA------AGATTGGACACGAAGAATTGACCGGCTATCTTGAAAAGC-     43

BSNT_03971___     43 TTATTAAAGCCTCGGCCGGATAACGTGAAGAAGCTTGAAGCATATGCAGA     92
                      |..|||||||.|||||||.|.|..|.|.|||.||.||.||.|||||.||
BL02028___yrr     44 -TGCTAAAGCCGCGGCCGGCTGAAATTATGAAACTGGAGGCCTATGCCGA     92

BSNT_03971___     93 AGAACATCATGTCCCGATTATGGAAAAAGCGGGCATGGAGGTGCTGCTTC    142
                     |||.|||...||.||.|||||||||....|.||.||.||.|||||.||.|
BL02028___yrr     93 AGAGCATGGCGTGCCCATTATGGAACCGACAGGAATCGAAGTGCTCCTGC    142

BSNT_03971___    143 AAATTTTGTCTGTGAAACAGCCGAAAAAAATACTAGAAATCGGAACGGCC    192
                     |..||.|.||..|.|||.|.|||||||||||.||.||||||||.||.|||
BL02028___yrr    143 AGCTTCTTTCATTCAAAAATCCGAAAAAAATTCTTGAAATCGGTACCGCC    192

BSNT_03971___    193 ATTGGTTATTCAGCCATTCGGATGGCGCTGGAGCTGCCGTCT-------G    235
                     ||.||.|||||.||.||||||||||||||     ||||  ||       |
BL02028___yrr    193 ATCGGCTATTCGGCGATTCGGATGGCGCT-----TGCC--CTTCCCGAAG    235

BSNT_03971___    236 CTGAAATATATACAATTGAACGCAATGAGAAACGGCATGAAGAAGCGGTA    285
                     |.||.||.|.||||||.||.|||.|||||.|..||.||...||||||.|.
BL02028___yrr    236 CCGAGATTTTTACAATCGAGCGCGATGAGGACAGGTATCGGGAAGCGCTG    285

BSNT_03971___    286 AACAATATCAAGGAATTTCAGCTTGATGACCGGATTCATGTTTTTTACGG    335
                     ||.||.|||..|..|||.||||||||..||.|.|||||.||.||.|.|||
BL02028___yrr    286 AAAAACATCCGGTCATTCCAGCTTGAAAACAGAATTCACGTGTTCTTCGG    335

BSNT_03971___    336 AGATGCGCT---TGAATTAGCCGACGCCGTTC-----ATGTAACCGCGCC    377
                     .||||||||   .||.|   |.|||.||||||     |||     ||.||
BL02028___yrr    336 CGATGCGCTCAGCGAGT---CTGACCCCGTTCAATCGATG-----GCTCC    377

BSNT_03971___    378 TTACGATGTCATTTTTATTGACGCTGCAAAAGGTCAGTATCAAAACTTTT    427
                     .||.||||...|.|||||.||.||.||||||||.||||||||.|| .|||
BL02028___yrr    378 CTATGATGCGCTGTTTATCGATGCCGCAAAAGGCCAGTATCAGAA-GTTT    426

BSNT_03971___    428 TTCA-TTTATATGAACCGATGCTTTCACCG--GACGGGGTGATTATAACA    474
                     |||| |.||||||||...||||||  .|||  |||||..|.|||.|.||.
BL02028___yrr    427 TTCAGTATATATGAAAAAATGCTT--GCCGATGACGGCATCATTTTTACG    474

BSNT_03971___    475 GACAACGTGCTGTTTAAAGGTCTGGTGGCAGAGGATTACAGCAAAAT-AG    523
                     |||||.||.||.||.|||||.||.||.|||...||.|||     ||| ||
BL02028___yrr    475 GACAATGTCCTTTTCAAAGGCCTTGTCGCATCAGAATAC-----AATCAG    519

BSNT_03971___    524 AACCGAAGAGAAGGCGC------AGGCTTGTAGCAAAAATTGATGAATAT    567
                      |.|||| ||.|.||||      |.|||||||.|.|||||.|||.|.||.
BL02028___yrr    520 -ATCGAA-AGCAAGCGCATCAAAAAGCTTGTATCGAAAATAGATCATTAC    567

BSNT_03971___    568 AATCATTGGCTGATGAATCATCCGGATTATCAAACTGCGATTATTCCTGT    617
                     |||||||||||||||.|.|||||.||.||.||.||.|||||..|.|||||
BL02028___yrr    568 AATCATTGGCTGATGGAGCATCCTGACTACCACACGGCGATCCTGCCTGT    617

BSNT_03971___    618 CGGGGACGGACTTGCGATTAGTAAAAAGAAGAGGTGA----------    654
                     .||.||||||.|.||..|.|||.|||| |||||||||          
BL02028___yrr    618 GGGCGACGGATTGGCCGTCAGTCAAAA-AAGAGGTGAACGGATATGA    663


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