Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03949 and BL02073
See
Amino acid alignment /
Visit
BSNT_03949 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_03949___yrhF.1.5803.seq
# -bsequence dna-align/BL02073___yrhF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03949___yrhF-BL02073___yrhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03949___yrhF-BL02073___yrhF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03949___yrhF
# 2: BL02073___yrhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 383
# Identity: 276/383 (72.1%)
# Similarity: 276/383 (72.1%)
# Gaps: 25/383 ( 6.5%)
# Score: 1021.0
#
#
#=======================================
BSNT_03949___ 1 ATGTCTAAAAAAATTCACGAATTCAATGATATCATTCGAAAACTTCGCAA 50
||||||||||||||.||.||||||||.|||||.|||||.||.|||||.||
BL02073___yrh 1 ATGTCTAAAAAAATCCATGAATTCAACGATATGATTCGCAAGCTTCGAAA 50
BSNT_03949___ 51 AGAATTGTTCGGAAAAGGGCCTGAGAGAATTCATACTGTATTTGTAGAAA 100
|||..||||.||.||.||||||||..|.||.|..||.||.|||||.||.|
BL02073___yrh 51 AGAGCTGTTTGGCAAGGGGCCTGAACGGATACGAACGGTCTTTGTCGACA 100
BSNT_03949___ 101 ACATGGCAGTTTCAACACTGTACGGAAATCTGAGTGCAAGCGAGCAGTTT 150
|.|||||||||||.|||||||||||.|||.|||..||.||||||||||||
BL02073___yrh 101 ATATGGCAGTTTCGACACTGTACGGCAATTTGACGGCGAGCGAGCAGTTT 150
BSNT_03949___ 151 ATCGCCCGCACGCCTGAAGGAAGAGAGATGGTGCATGCGGCCCGGACAAG 200
|||||..|||||||.||.|||||.||.||||||||||||||..||||.|.
BL02073___yrh 151 ATCGCAAGCACGCCGGAGGGAAGGGAAATGGTGCATGCGGCAAGGACGAC 200
BSNT_03949___ 201 CTTGATTCAAGACCTTTATTCCAAACAAACGCCGGAAGGAATGGAGGAAC 250
|.|||||||..|.|..||.|||||.||...||||||||||||||||||.|
BL02073___yrh 201 CCTGATTCAGAAACACTACTCCAATCACGTGCCGGAAGGAATGGAGGAGC 250
BSNT_03949___ 251 TCATGGGAGCTAAGCTAGTCCATTTGTTTTCTGATATTAAAATTGAGGAA 300
|.||.|||||.|||||||..||..|.|||.|.||.||.||||||.||||.
BL02073___yrh 251 TTATCGGAGCGAAGCTAGAGCACCTTTTTACGGACATCAAAATTCAGGAG 300
BSNT_03949___ 301 AACATCGCTGTATCTGTATTTGTTTTTGACCGAAAAATAG---------- 340
.|.||.||.||.|||||.|||.|.||||||||.||.||.|
BL02073___yrh 301 GATATTGCAGTGTCTGTTTTTATCTTTGACCGCAATATTGAAGGCGTCGC 350
BSNT_03949___ 341 ---ATGAGCAAAAAGAAGTTCTGCAAAGCTAG- 369
||.||| |.||...|||.|
BL02073___yrh 351 CGAATCAGC-----------CGGCGGGGCTTGA 372
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.