Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05481 and BL02443

See Amino acid alignment / Visit BSNT_05481 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence dna-align/BSNT_05481___rbsB.1.5803.seq
#    -bsequence dna-align/BL02443___rbsB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05481___rbsB-BL02443___rbsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05481___rbsB-BL02443___rbsB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05481___rbsB
# 2: BL02443___rbsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 941
# Identity:     689/941 (73.2%)
# Similarity:   689/941 (73.2%)
# Gaps:          49/941 ( 5.2%)
# Score: 2475.5
# 
#
#=======================================

BSNT_05481___      1 ATGAAAAAGGCAGTATCCGTCATTTTAACGTTATCAT---------TATT     41
                     ||||||||..||.||.|.||  |||.|.||    |||         |.||
BL02443___rbs      1 ATGAAAAAAACATTAACGGT--TTTCACCG----CATTGGCGCTTCTGTT     44

BSNT_05481___     42 TTTGTTAACCGCCTGTTCGCTTGAGCCTCCCCAATGGGCAAAGCC---TT     88
                     |.|||   |||||||.|||||.|||||.||..|||||||||||||   | 
BL02443___rbs     45 TCTGT---CCGCCTGCTCGCTGGAGCCGCCGGAATGGGCAAAGCCGAAT-     90

BSNT_05481___     89 CAAACTCGGGGAACAA--AAAGGATTTCACCATCGGCTTGTCCGTCTCAA    136
                      |||      |||.||  ||.||||.|.|..|||||.||.||.|||||||
BL02443___rbs     91 -AAA------GAAAAAGGAACGGATATTAAAATCGGTTTATCTGTCTCAA    133

BSNT_05481___    137 CGCTTAATAATCCTTTTTTTGTCTCATTAAAAAAGGGTATCGAAAAAGAA    186
                     |..|.||.|||||.|||||.||.||||||||.||.||..|.|..||||||
BL02443___rbs    134 CTTTGAAAAATCCGTTTTTCGTTTCATTAAAGAACGGAGTTGTCAAAGAA    183

BSNT_05481___    187 GCTGAAAAACGGGGAATGAAAGTGATCATTGTTGATGCACAAAATGATTC    236
                     ||..||||||..||.||..|||||||..|.||.||||||||..|.|||||
BL02443___rbs    184 GCCAAAAAACAAGGGATAGAAGTGATTGTCGTCGATGCACAGGACGATTC    233

BSNT_05481___    237 ATCGAAACAGACGAGTGACGTGGAAGATTTAATTCAGCAAGGTGTTGATG    286
                     ..|.||.|||||||.|||.||.||||||.|..|.||||||||.|||||.|
BL02443___rbs    234 GGCAAAGCAGACGAATGATGTCGAAGATCTTCTGCAGCAAGGCGTTGACG    283

BSNT_05481___    287 CATTATTAATCAACCCGACTGATTCTTCGGCGATCTCAACGGCAGTAGAA    336
                     |.|||||.|||||||||.|.||.||.||.||.||||||||.|||||..||
BL02443___rbs    284 CTTTATTGATCAACCCGGCGGACTCCTCCGCCATCTCAACTGCAGTCCAA    333

BSNT_05481___    337 TCTGCAAA--CGCAGTCGGTGTGCCCGTCGTAACAATCGATCGATCTGCC    384
                     ||.||.||  |||  |.||..|.||.|||||.||..|.||.||.||.|||
BL02443___rbs    334 TCGGCCAATTCGC--TTGGCATTCCGGTCGTCACCCTTGACCGCTCCGCC    381

BSNT_05481___    385 GAACAAGGAAAAGTTGAAACTCTCGTTGCTTCCGATAATGTAAAAGGCGG    434
                     |||.|.||||||||.|||||.|||||.|||||.|||||.|||||||||||
BL02443___rbs    382 GAAAACGGAAAAGTAGAAACGCTCGTCGCTTCAGATAACGTAAAAGGCGG    431

BSNT_05481___    435 TGAAATGGCCGCGGCGTTTATTGCCGATAAACTTGGAAAAGGAGCAAAGG    484
                     ..|||||||.||||..|||||||..||..|.||.||.|||||.|||||.|
BL02443___rbs    432 ACAAATGGCAGCGGACTTTATTGTGGAGCAGCTCGGCAAAGGCGCAAAAG    481

BSNT_05481___    485 TGGCAGAGCTTGAAGGCGTCCCCGGCGCATCTGCCACACGGGAACGCGGC    534
                     ||||.||||||||||||||||||||||||||.||.|||.|||||||.|||
BL02443___rbs    482 TGGCTGAGCTTGAAGGCGTCCCCGGCGCATCGGCAACAAGGGAACGGGGC    531

BSNT_05481___    535 TCAGGATTTCATAACATCGCAGACCAAAAGCTCCATGTTGTCACAAAACA    584
                     |||||.||||||||.|.|||.||..|.|||||..||||..||.|.||.||
BL02443___rbs    532 TCAGGGTTTCATAAGACCGCTGATGACAAGCTGAATGTGATCGCCAAGCA    581

BSNT_05481___    585 ATCAGCTGACTTTGACCGCACGAAAGGCCTGACTGTCATGGAAAACCTGC    634
                     |.||||.|||||||||||.||.|||||..|||..||||||||.|||||.|
BL02443___rbs    582 AACAGCCGACTTTGACCGGACAAAAGGGTTGAACGTCATGGAGAACCTCC    631

BSNT_05481___    635 TGCAGGGACATCCTGATATCCAAGCTGTTTTTGCTCACAACGATGAAATG    684
                     |.||.|||.|.||||||||.|||||.|||||.||.||.||.||.||||||
BL02443___rbs    632 TTCAAGGAAACCCTGATATTCAAGCGGTTTTCGCACATAATGACGAAATG    681

BSNT_05481___    685 GCGCTCGGTGCTCTCGAAGCAATTAACAGCTCGGGAAAAGACATATTGGT    734
                     ||||||||.||..|.|||||.||.|..|||||.||.|||||.||..|.||
BL02443___rbs    682 GCGCTCGGCGCGATTGAAGCGATCAGAAGCTCAGGGAAAGAGATTCTTGT    731

BSNT_05481___    735 AATCGGCTTTGACGGCAATAAAGACGCGCT-----CGCTTCCATTAAAGA    779
                     ..|||||||.|||||||||.||||.|||.|     ||.|||     |.|.
BL02443___rbs    732 CGTCGGCTTCGACGGCAATGAAGATGCGGTTAAAGCGGTTC-----AGGC    776

BSNT_05481___    780 CGGAAAGCTGTCAGCCACCGTAGCTCAGCAGCCTGAATTAATCGGTAAAC    829
                     ||||.|..||||.||.||..|.||.||||||||||||||.|||||.||.|
BL02443___rbs    777 CGGAGACATGTCGGCAACGATCGCCCAGCAGCCTGAATTGATCGGCAAGC    826

BSNT_05481___    830 TGGC--TACAGAAGCAGCAGATGATATTTTGCACGGAAAAAAAGTGCAAA    877
                     |.||  |||  ||||.||....|||||||||.||||.||||||||..|||
BL02443___rbs    827 TCGCCGTAC--AAGCGGCCCGCGATATTTTGAACGGCAAAAAAGTTGAAA    874

BSNT_05481___    878 AAACAATATCCGCGCCTCTCAAACTAGAAACACAAAAATAA    918
                     ||||.|||.||||.||.||||||||.|||||..||||.|||
BL02443___rbs    875 AAACGATACCCGCACCGCTCAAACTGGAAACGAAAAAGTAA    915


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