Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05470 and BL02476

See Amino acid alignment / Visit BSNT_05470 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:37
# Commandline: needle
#    -asequence dna-align/BSNT_05470___ywtB.1.5803.seq
#    -bsequence dna-align/BL02476___pgsAA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05470___ywtB-BL02476___pgsAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05470___ywtB-BL02476___pgsAA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05470___ywtB
# 2: BL02476___pgsAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity:     828/1210 (68.4%)
# Similarity:   828/1210 (68.4%)
# Gaps:         107/1210 ( 8.8%)
# Score: 2598.5
# 
#
#=======================================

BSNT_05470___      1 ATGAAAAAAGAACTGAGCTTTCATGAAAAGCTGCTAAAGCTGACAAAACA     50
                     |||||||||.||||||.||||||.|||||.|||||.|||.||||.||.||
BL02476___pgs      1 ATGAAAAAACAACTGAACTTTCAGGAAAAACTGCTGAAGTTGACGAAGCA     50

BSNT_05470___     51 GCAAAAAAAGAAAACCAATAAGCACGTATTTATTGCCATT--CCGATCGT     98
                     |.|.|||||||||||.||.||||||||.|||||.| .|||  |||.|..|
BL02476___pgs     51 GGAGAAAAAGAAAACAAACAAGCACGTCTTTATCG-TATTGCCCGTTATT     99

BSNT_05470___     99 TTTTGTCCTT-ATGTTCG-CTTTCATGTGGGCGGGAAAAGCGGAAA----    142
                     ||.|||  || |||||.| |||| |..||||..||||..||..|||    
BL02476___pgs    100 TTCTGT--TTAATGTTTGTCTTT-ACTTGGGTCGGAAGCGCCAAAACTCC    146

BSNT_05470___    143 --CGCCGAAGGTC-AAAACGTATTCTGACGACGTACTCTCAGCCTCATTT    189
                       |||..|.||.| ||||.|.|    ||.|.|...||..||||..|.|||
BL02476___pgs    147 TTCGCAAATGGACAAAAAAGAA----GATGCCAAGCTTACAGCTACTTTT    192

BSNT_05470___    190 GTAGGCGATATTATGATGGGACGCTATGTTGAAAAAGTAACGGAGCAAA-    238
                     ||.||||||||.|||||||||.|..|.||.||||||||.|     |||| 
BL02476___pgs    193 GTTGGCGATATCATGATGGGAAGAAACGTAGAAAAAGTGA-----CAAAC    237

BSNT_05470___    239 ----AAGGGGCAGACAGTATTTTTCAATATGTTGAA-CCGATCTTTAGAG    283
                         |.||..|.||.|||.|.||..||.||| |||| |||..|||||..|
BL02476___pgs    238 TTGCACGGTTCGGAAAGTGTCTTCAAAAATG-TGAAGCCGTACTTTAATG    286

BSNT_05470___    284 CCTCGGATTATGTAGCAGGAAACTTTGAAAACCCGGTAACCTATCAAAAG    333
                     ..||.||||.|.|..|||||||||||||||||||.||||||.||..||||
BL02476___pgs    287 TGTCAGATTTTATCACAGGAAACTTTGAAAACCCTGTAACCAATGCAAAG    336

BSNT_05470___    334 AATTATAAACAAGCAGATAAAG-AGATTCATCTGCAGACGAATAAGGAAT    382
                     .|.|||.||.|.||||| |||| |.||.||||||||.||||||.|.||||
BL02476___pgs    337 GACTATCAAGAGGCAGA-AAAGAACATCCATCTGCAAACGAATCAAGAAT    385

BSNT_05470___    383 CAGT-GAAAGTC-TTGAAGGATATGAATTTCACGGTTCTCAACAGCGCAA    430
                     |||| ||||  | |||||..|..||||.||||..||.||.||....||.|
BL02476___pgs    386 CAGTCGAAA--CATTGAAAAAGCTGAACTTCAGCGTACTGAATTTTGCCA    433

BSNT_05470___    431 ACAACCACGCAATGGATTACGGCGTTCAGGGCATGAAAGATACGCTTGGA    480
                     |||||||.||.|||||.|||||.|...|.||..||||.||||||||....
BL02476___pgs    434 ACAACCATGCGATGGACTACGGGGAAGACGGTTTGAAGGATACGCTCAAT    483

BSNT_05470___    481 GAATTTGCGAAGCAAAACCTTGATATCGTTGGAGCGGG--ATACAGCTT-    527
                     .|||||.|.||..|.||.||.||..|.||.|||||.||  ||| |.||| 
BL02476___pgs    484 AAATTTTCAAATGAGAATCTGGAGCTTGTCGGAGCAGGAAATA-ATCTTG    532

BSNT_05470___    528 AAGTGATGCGAAAAAGAAAATTTCGTACCAGAAAGTCAACGGGGTAACGA    577
                     ||  ||.||||||.||.|..|.||.||.|||||.||.|||||.||||..|
BL02476___pgs    533 AA--GACGCGAAACAGCACGTATCCTATCAGAATGTGAACGGCGTAAAAA    580

BSNT_05470___    578 TTGCGACGCTTGGCTTTACCGATGTGTCCGGGAAAG--GTTTCGCGGCTA    625
                     ||||.|||||.||.|||||.||.||.|.| ..||||  .||| .|.||.|
BL02476___pgs    581 TTGCAACGCTCGGTTTTACAGACGTCTAC-ACAAAGAACTTT-ACAGCCA    628

BSNT_05470___    626 AAAAGA--ATACGCCGGGCGTGCTGCC-CGCAGATCCTGAAATCTTCATC    672
                     ||||||  |.|.||  ||.|||||||| |.||| |||..|||||||.||.
BL02476___pgs    629 AAAAGAACAGAGGC--GGAGTGCTGCCGCTCAG-TCCGAAAATCTTTATT    675

BSNT_05470___    673 CCTATGATTTCAGAAG---CGAAAAAACATGCTGACATTGTTGTTGTGCA    719
                     ||.||||||.|.||||   ||||||||   ||.||..||||..||||.||
BL02476___pgs    676 CCAATGATTGCGGAAGCATCGAAAAAA---GCGGATCTTGTCCTTGTCCA    722

BSNT_05470___    720 -GTCACACTGGGGCCAAGAGTATGACAATGATCCAAACGACCGCCAGCGC    768
                      || .||||||||.|||||.|||||||||||.||.||||||.|.|||...
BL02476___pgs    723 TGT-GCACTGGGGACAAGAATATGACAATGAACCGAACGACAGACAGAAG    771

BSNT_05470___    769 CAGCTTG-CAAGAGCCATGTCTGATGCGGGAGCTGACATCATCGTCGGCC    817
                     .|.||.| |||| ||.||..|.|||||.|||||.||..|||||.|||||.
BL02476___pgs    772 GATCTGGCCAAG-GCGATTGCAGATGCCGGAGCAGATGTCATCATCGGCG    820

BSNT_05470___    818 ATCATCCGCACGTCTTAGAACCGATTGAAGTATATAACGGAACCGTCATT    867
                     .||||||.||.||..|.||||||||.|||||.||||||||.||.||.|||
BL02476___pgs    821 CTCATCCCCATGTTCTCGAACCGATCGAAGTGTATAACGGTACTGTGATT    870

BSNT_05470___    868 TTCTACAGCCTCGGCAACTTTGTCTTTGACCAAGGCTGGACGAGAACAAG    917
                     |||||||||||||||||||||||.|||||.||.||||||.|.||||||.|
BL02476___pgs    871 TTCTACAGCCTCGGCAACTTTGTATTTGATCAGGGCTGGTCAAGAACACG    920

BSNT_05470___    918 AGACAGTGCACTGGTTCAGTATCACCTGAAGAAAAATGGAACAGGCCGCT    967
                     .|||||.||.||.||.||.||.||..|.|.|||..|.||.|.|||.||||
BL02476___pgs    921 GGACAGCGCGCTTGTACAATACCATTTAATGAATGACGGCAAAGGGCGCT    970

BSNT_05470___    968 TTGAAGTGACACCGATCGATATCCATGAAGCGACACCTGCACCTGTGAAA   1017
                     ||||.||.||.||..||.|.||.|..|||||.||.||..|.|||.|    
BL02476___pgs    971 TTGAGGTAACGCCTCTCAACATTCGCGAAGCAACGCCGACGCCTTT----   1016

BSNT_05470___   1018 AAAG---ACAGC-----CTTAAACAGAAAACCATTATTCGCG--AACTGA   1057
                       ||   |.|||     ||||||..|||||.|..|.||| ||  ||.|||
BL02476___pgs   1017 --AGGCAAGAGCGACTTCTTAAAACGAAAAGCGATCTTC-CGTCAATTGA   1063

BSNT_05470___   1058 CGAAAGACTCTAATTTCGCTTGGAAAGTAGAAGACGGAAAACTGACGTTT   1107
                     |.||||...|.||..|||..|||||||.|||..||||||||.|.||||||
BL02476___pgs   1064 CAAAAGGAACAAACCTCGACTGGAAAGAAGAGAACGGAAAATTAACGTTT   1113

BSNT_05470___   1108 GATATTGATCATAGTGACAAACT--AAAATCTAAATAA------------   1143
                     ||..|.||||||...|||||.||  |||||   |||||            
BL02476___pgs   1114 GAAGTCGATCATGCGGACAAGCTGAAAAAT---AATAAAAACGGAGTGGT   1160

BSNT_05470___   1143 ----------   1143
                               
BL02476___pgs   1161 GAACAAATGA   1170


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