Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00317 and BL02716
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_00317___ybbD.1.5803.seq
# -bsequence dna-align/BL02716___ybbD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00317___ybbD-BL02716___ybbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00317___ybbD-BL02716___ybbD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00317___ybbD
# 2: BL02716___ybbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2054
# Identity: 1370/2054 (66.7%)
# Similarity: 1370/2054 (66.7%)
# Gaps: 247/2054 (12.0%)
# Score: 4188.0
#
#
#=======================================
BSNT_00317___ 1 ATG---AGACCTGTCTT---TCCGCTTATCCTTTCA--GCCGTTCTCTTT 42
||| ||| |.|||| |.|||.| |..||.|| ||.|||.|| .|
BL02716___ybb 1 ATGAAAAGA--TTTCTTCAATGCGCGT-TGATTGCATTGCTGTTATC-GT 46
BSNT_00317___ 43 CTTTCATGCTTTTTCGG--GGCC--------AGACAGA--CAGA--AGCC 78
||.|| || |||.|.| |||| || |||| ||.| |||.
BL02716___ybb 47 CTCTC--GC-TTTGCAGCCGGCCGCTCGCGAAG-CAGAAGCAAAACAGCG 92
BSNT_00317___ 79 TCTGCATCCAAACGTGCAATCGATGCCAATCAGATTGTCAATCGTATGTC 128
||.|.|.|.||||.| |||.||.||.||||...|.|||||
BL02716___ybb 93 TCCGGAACAAAACAT-----------CAAACAAATGGTCAGCAGCATGTC 131
BSNT_00317___ 129 GTTAGATGAAAAACTCGGCCAGATGCTGATGCCTGATTTTAGAAATTGGC 178
|.|.||.||.|||.||||.||.||||||||||||||.||||||||.|||.
BL02716___ybb 132 GCTTGAAGAGAAAATCGGGCAAATGCTGATGCCTGACTTTAGAAACTGGA 181
BSNT_00317___ 179 AAAAGGAAGG-----CGAGTCCTCTCCGC--AAGCCCTTACAGAAATGAA 221
|.||..|||| |||| ||| |||...|.|||||||||||
BL02716___ybb 182 AGAAAAAAGGGGAATCGAG-------CGCCAAAGGATTAACAGAAATGAA 224
BSNT_00317___ 222 TGATGAAGTCGCCAGCCTCGTCAAGAAATATCAATTCGGAGGCATCATCC 271
|||.|||||.||..|..||.|..|.|||||.|...||||.|||.||||.|
BL02716___ybb 225 TGACGAAGTTGCTGGAATCATTGAAAAATACCGGCTCGGGGGCGTCATTC 274
BSNT_00317___ 272 TTTTTGCAGAAAATGTAAAAACAACAAAACAAACTGTCC----AACTGAC 317
|||||||.|||||.||.|.|...|||.|.||.|||||.| |||.|||
BL02716___ybb 275 TTTTTGCTGAAAACGTCACAGGCACAGAGCAGACTGTACGGTTAACGGAC 324
BSNT_00317___ 318 AGAC-GATTACCAAAAGGCAAGTCCAAAAATCCCGCTCATGCTGAGTATT 366
.|.| | |||.|.||.||.||..|.||.||||||.|..|.|..||.
BL02716___ybb 325 GGCCTG-----CAACAAGCGAGCCCTGACATTCCGCTCTTTATCACGATC 369
BSNT_00317___ 367 GATCAGGAAGGCGGCATTGTAACGCGGTTAGGGGAG----------GGCA 406
||||||||||||||.|||||.|| ||| ||||
BL02716___ybb 370 GATCAGGAAGGCGGGATTGTCAC----------GAGACTCGAATCAGGCA 409
BSNT_00317___ 407 CTAATTTCCCAGGGAATATGGCACTGGGCGCAGCCAGAAGCAGAATCAAT 456
|.||..|..|.||.|||||||||.|.||.|||.|.||||||||.|..||.
BL02716___ybb 410 CAAACCTGGCCGGCAATATGGCAGTCGGAGCATCGAGAAGCAGCAAAAAC 459
BSNT_00317___ 457 GCGTATCAGA-CCGGCAGCATCATCGGGAAAGAGCTCTCTGCCTTAGGCA 505
||.| ||||| |.||.|..||||||||.|||||..|.||..|..|.||||
BL02716___ybb 460 GCCT-TCAGATCAGGAAAAATCATCGGAAAAGAATTATCATCACTGGGCA 508
BSNT_00317___ 506 TCAATACAGATTTCAGCCCTGTCGTGGACATTAACAATAATCCTAATAAT 555
|.||.....|||||||.|||||..|.||..|.|||||.|||||..|.||.
BL02716___ybb 509 TTAACGTGAATTTCAGTCCTGTACTTGATGTCAACAACAATCCCGACAAC 558
BSNT_00317___ 556 CCTGTAATCGGCGTACGGTCATTCAGCTCCAATCGAGAACTGACATCACG 605
|||||.||||||||.||.||.|||||.|||||.|..||.|||||.|||..
BL02716___ybb 559 CCTGTCATCGGCGTCCGTTCTTTCAGTTCCAAGCCTGAGCTGACTTCAAA 608
BSNT_00317___ 606 CCTCGGTTTATACACGATGA--AAGGG--TTGCAG--CG-GCAGGAT-AT 647
.||||| .||.|| ||||| ||||| || ||| || ||| .|| ||
BL02716___ybb 609 GCTCGG--CATCCA-GATGATGAAGGGCCTT-CAGGACGAGCA-AATGAT 653
BSNT_00317___ 648 CGCGTCTGCCCTCAAA-CA-TTTCCCGGGACATGGAGACACGGACGTTGA 695
|||..|.| |||| || |||||| |||||.||.||.||.|..|||||
BL02716___ybb 654 CGCCACAG----CAAAGCACTTTCCC-GGACACGGCGATACAGCGGTTGA 698
BSNT_00317___ 696 CAGCCATTATGGACTGCCGCTCGTTTCCCATGGCCAAGAACGGCTTCGTG 745
|||.|||||.|||.|||||||.|||.|.|||....||.||.||| ||
BL02716___ybb 699 CAGTCATTACGGATTGCCGCTTGTTCCGCATAATGAAAAAAGGC----TG 744
BSNT_00317___ 746 AG----GTCGAGCTTTATCCTTTTCAAAAAGCAATTGATGCTGGTGCTGA 791
|| ||.||.|||...||.||||||||.||.||.|||||.|||..|||
BL02716___ybb 745 AGAAGTGTTGAACTTGCGCCATTTCAAAAGGCGATCGATGCAGGTATTGA 794
BSNT_00317___ 792 TATGGTGATGACAGCCCATGTTCAGTTTCCCGCCTTTGATGACACCACTT 841
.|||.|.||||||||.|||||.|||||.|||||||||||.||.||.||.|
BL02716___ybb 795 CATGATCATGACAGCGCATGTCCAGTTCCCCGCCTTTGACGATACTACCT 844
BSNT_00317___ 842 ACAAAAGCAAACTCGATGGATCGGACATTTTGGTTCCAGCTACACTTTCA 891
|.|||||||||...||.||...||||||..||||.||.|||||.|||||.
BL02716___ybb 845 ATAAAAGCAAAAAAGACGGCGAGGACATCATGGTGCCTGCTACGCTTTCC 894
BSNT_00317___ 892 AAAAAAGTGATGACAGGTCTTCTTCGTCAGGAAATGGGCTTTAATGGTGT 941
||||||||.|||||||..|||||.||..|.||..|..|||||||.||.||
BL02716___ybb 895 AAAAAAGTCATGACAGACCTTCTCCGCAAAGATCTCAGCTTTAAGGGCGT 944
BSNT_00317___ 942 GATCGTTACCGATGCACTCAATATGAAGGCAATCGCAGATCATTTCGGAC 991
..|.||.||.||.||..|.||||||||.||.||..|.|||.|||||||||
BL02716___ybb 945 TGTTGTAACAGACGCTTTAAATATGAAAGCCATTTCTGATAATTTCGGAC 994
BSNT_00317___ 992 AGGAAGAGGCTGTGGTCATGGCCGTAAGAGCTGGTGTCGATATTGCATTA 1041
||||.||.||.||.||||||||.||.|.|||.||.|||||.||.|||.|.
BL02716___ybb 995 AGGAGGAAGCCGTCGTCATGGCTGTTAAAGCAGGAGTCGACATCGCACTC 1044
BSNT_00317___ 1042 ATGCCAGCCTCAGTCACTTC-ATTGAAA--GAAGAACAGAAAT-TCGCAC 1087
|||||.||...||||||.|| .||||.| ||| |.|||| |.||.|
BL02716___ybb 1045 ATGCCCGCGCAAGTCACATCGCTTGAGACCGAA----AAAAATCTGGCGC 1090
BSNT_00317___ 1088 GTGTTATTC-AAGC---TTTGAAAGAAGCCGTGAAAAACGGGGATATTCC 1133
||| ||||| |||| |.||| .||||||.|||||.||||||||.||
BL02716___ybb 1091 GTG-TATTCGAAGCTCTTCTGA---CAGCCGTTAAAAATGGGGATATCCC 1136
BSNT_00317___ 1134 --TGAACAACAAATCAACAATTCAGTTGAAAGAATCATTTCCCTGAAAAT 1181
|| .||||||||.|..|.||.||.||..|||||.||....|.|||||
BL02716___ybb 1137 CATG--GAACAAATCGATCAGTCGGTGGAGCGAATCCTTCAATTAAAAAT 1184
BSNT_00317___ 1182 AAAACGCGGCAT----GTATC-CAGCG----CGAAACAGCGACAGTACAA 1222
|.|.||.||||| | ||| ||.|| || |||.||..|||
BL02716___ybb 1185 AGACCGAGGCATCATAG-ATCACACCGGCTCCG-AACCGCTTCAG----- 1227
BSNT_00317___ 1223 AAGAAAAAATAGCCAAA---GCCAAAAAAATCGTAGGAAGCAAGC-AGCA 1268
.||||||| |||| |||...||||..||.||.||| ||| |.||
BL02716___ybb 1228 --AAAAAAAT---CAAATACGCCTTGAAAACGGTCGGCAGC-AGCAAACA 1271
BSNT_00317___ 1269 CCTGAAAGCAGAGAAAAAAATAGCTGAA---AAAGCAGTAACTGTATTAA 1315
|.|||||...||.||.|||||.|| || |.||| |..|||.|..|.|
BL02716___ybb 1272 CATGAAATACGAAAAGAAAATGGC--AAGGGATAGC-GCCACTATCCTTA 1318
BSNT_00317___ 1316 AAAATG--AACAGCACACTTTGCCATTCAAGCCTAAAAAAGG---CAGCC 1360
||||.| ||.|||||.| ||||.||.||.||.|||||||| || ||
BL02716___ybb 1319 AAAACGACAAAAGCACCC--TGCCGTTTAAACCGAAAAAAGGGGACA-CC 1365
BSNT_00317___ 1361 GAATCTTAATTGTGGCACCTTACGAAGAACAAACTGCTTCAATCGAACAA 1410
| ||.|.|||.|.||.||.||.|||||.|||||.||..||||||.|.|.
BL02716___ybb 1366 G--TCCTCATTCTCGCTCCATATGAAGAGCAAACAGCAGCAATCGCAAAG 1413
BSNT_00317___ 1411 ACCATTCACGATCTCATCAAGCGAAAGAAA---ATCAAACCCGTATCTGT 1457
|||| |||.|||...||.|||| ||||| .||| ||
BL02716___ybb 1414 ACCA---------TCAGCAAAATAAGGAAAAACATCAA---GGTA---GT 1448
BSNT_00317___ 1458 CGACAAAATGAAT-----TTTGCCAACCAAGTATTTAAGGCCGAGCATGC 1502
| |||| |||||..|..||...|||.|||..||| ||.|
BL02716___ybb 1449 C--------GAATACCGCTTTGCAGAAAAAACGTTTGAGGAAGAG-ATTC 1489
BSNT_00317___ 1503 AAAACAAGTAA---AAAAGGCTGATTATATCATAACCGGCTCCTATGTCG 1549
||||.|| || |..|.||.||||||.||||.||.||.||.||.|||.
BL02716___ybb 1490 AAAAGAA--AATTGACGAAGCCGATTATGTCATCACAGGATCATACGTCA 1537
BSNT_00317___ 1550 TCAAAAATGATCCTGTCGTCAACGACGGTGTCATCGACGACACAATATC- 1598
|||||||.|||||.||.||.||||||||||||||.||.||||..|| ||
BL02716___ybb 1538 TCAAAAACGATCCGGTTGTGAACGACGGTGTCATTGATGACAGCAT-TCA 1586
BSNT_00317___ 1599 AGATTCAAGCAAATGGGCCACCGTGTTTCCGAGAGCTGTCATGAAAGCCG 1648
|||.||||||||.|||||.||||..||||||.|.||.|.|||||||..||
BL02716___ybb 1587 AGACTCAAGCAAGTGGGCAACCGCTTTTCCGCGCGCCGCCATGAAATACG 1636
BSNT_00317___ 1649 CACTGCAGCACAAC---AAACCATTTGTCTTAATGAGCCTGCGCAACCCC 1695
| ||||..|||| |||..|||.|||||||||||||||.|.|||||.
BL02716___ybb 1637 C---GCAGGCCAACGGAAAAAAATTCGTCTTAATGAGCCTGAGAAACCCT 1683
BSNT_00317___ 1696 TATGACGCAGCCAATTTCGAAGAAACAAAGGCACTGATTGCAGTCTATGG 1745
||||||.|.||.|||||.||||||.|..|.||..|||||||.||.||.||
BL02716___ybb 1684 TATGACACGGCAAATTTTGAAGAAGCCGAAGCCGTGATTGCGGTATACGG 1733
BSNT_00317___ 1746 CTTTAAAGGATACGCAAATGGCCGTTATCTT----CAACCTAATATTCCG 1791
|||||||||.||.|||||.||.|| ||| ||.||.|||||.|||
BL02716___ybb 1734 CTTTAAAGGCTATGCAAACGGACG----CTTCAGGCAGCCGAATATCCCG 1779
BSNT_00317___ 1792 GCCGGAGTGATGGCGATATTCGGCCAGGCAAAACCTAAAGGCACACTTCC 1841
|||||||||...||.||.|||||..|||||||.||||||||.|||.|.||
BL02716___ybb 1780 GCCGGAGTGGAAGCCATTTTCGGAAAGGCAAAGCCTAAAGGAACATTGCC 1829
BSNT_00317___ 1842 AGTTGACATTCCGTCAGTCACGAAACCAGGGAACACCCTTTACCCATTTG 1891
.||.||||||||.|||||||||...||.|||.|.|||||||||||.|.||
BL02716___ybb 1830 CGTAGACATTCCTTCAGTCACGCGCCCCGGGGAAACCCTTTACCCGTATG 1879
BSNT_00317___ 1892 GCTACGGATTAAATA-TCAAAACGGGAAGACCGCTTTAA----------- 1929
||||||||||.|||| |.|||||||.||| ||||||.|.
BL02716___ybb 1880 GCTACGGATTGAATATTAAAAACGGCAAG-CCGCTTCACAAAGGAGGGTC 1928
BSNT_00317___ 1929 ---- 1929
BL02716___ybb 1929 ATGA 1932
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