Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03398 and BL02794

See Amino acid alignment / Visit BSNT_03398 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_03398___seaA.1.5803.seq
#    -bsequence dna-align/BL02794___seaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03398___seaA-BL02794___seaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03398___seaA-BL02794___seaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03398___seaA
# 2: BL02794___seaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 932
# Identity:     662/932 (71.0%)
# Similarity:   662/932 (71.0%)
# Gaps:          70/932 ( 7.5%)
# Score: 2218.5
# 
#
#=======================================

BSNT_03398___      1 ATGAGTGATTACATCTATCCGATTATTGCTGGGGTCATT---GCCGGAAT     47
                     |||||..|.||.|..||||||||.||  ||.||| .|||   ||.||.||
BL02794___sea      1 ATGAGCCAATATACTTATCCGATCAT--CTTGGG-AATTGTCGCAGGTAT     47

BSNT_03398___     48 TG-CGACA-AGGCTTTATATGCTGAAAACGGATTACCGCCAGTATCCGAC     95
                     || .|.|| ||  |.||||||||...|||.||.|||||||||||.||.||
BL02794___sea     48 TGTTGTCAGAG--TATATATGCTCCGAACCGACTACCGCCAGTACCCCAC     95

BSNT_03398___     96 CTATGTTCATGGGAAAGTGATTCACATCGCACTGGGGTTGATAGCGGCTG    145
                     .|||.|||||||||||..|||.||.||.||.||||..|||||.||.||..
BL02794___sea     96 TTATCTTCATGGGAAAACGATACATATTGCGCTGGCTTTGATCGCTGCCA    145

BSNT_03398___    146 GTTTAGGTGCAATTATTATGCCGGCGCTTTTGCAGGAGGAATTTACGGCC    195
                     |..|.||.||.||.|||||.|||.|..|.|||.|...|||.|.|||.||.
BL02794___sea    146 GCATTGGCGCGATCATTATTCCGTCAATCTTGAAATCGGATTATACAGCG    195

BSNT_03398___    196 ATCACATTTTTAACATTGGCAGCGACGCAATTTAGAGATGTCCGAAACAT    245
                     ||.||.||||||||..||||.||.||.|||||.||.||||||||.|||||
BL02794___sea    196 ATTACGTTTTTAACGCTGGCTGCAACCCAATTCAGGGATGTCCGGAACAT    245

BSNT_03398___    246 GGAGCGGAACACATTGACGCAAATGGATTCG--TATGAACTTGTCTCAAG    293
                     |||.|||.|.|||||||||||..|.||  ||  ||||||||.||.|||||
BL02794___sea    246 GGAACGGGAAACATTGACGCAGCTTGA--CGGCTATGAACTCGTTTCAAG    293

BSNT_03398___    294 GGGAAGCACATATATTGAGGGGATTGCCATTGCGTTTGAAAGCAGAAATT    343
                     .||.|||||.|||||.||.||.||.||.||.||.|||||||||||.||||
BL02794___sea    294 AGGCAGCACGTATATCGAAGGAATCGCGATCGCCTTTGAAAGCAGGAATT    343

BSNT_03398___    344 ATATTGTGATCTTTACAGCGCTTTTGACAACCTCT-GCGTA---TGTGTT    389
                     |.|||||.||.||||||.||||..||||.||| || ||.||   |.||||
BL02794___sea    344 ACATTGTCATTTTTACATCGCTCCTGACGACC-CTCGCATACATTCTGTT    392

BSNT_03398___    390 TTTATCCATCTGGGC------TGCTGTCATAGCGGCTGTCGTTTGTTTT-    432
                     ||.|||..|.|||||      ||||      ||.|||.|..|.|||||| 
BL02794___sea    393 TTCATCGGTATGGGCAGGCCTTGCT------GCTGCTTTGATCTGTTTTA    436

BSNT_03398___    433 TTACTGGCTATGAA-GTTTATGTCGGGCAG-TGTGTTGAAGGATATTGTA    480
                     |..|.|||  .||| .||.|||||.||.|| |.|.|| ||||||||.|..
BL02794___sea    437 TCGCGGGC--AGAATCTTAATGTCCGGAAGCTTTATT-AAGGATATCGCC    483

BSNT_03398___    481 GATATCGAGTACATAAAGCCGCGCTTTGACGGTCCGGGACTGTTTGTTGA    530
                     |||||.|||||.|.||||||.|..|||||.||..|.|||||.|.|||.||
BL02794___sea    484 GATATAGAGTATAAAAAGCCTCATTTTGAAGGGGCCGGACTTTATGTCGA    533

BSNT_03398___    531 TAATATTTATATGATGAATATCGGGCTTCCAGAGAAACAGGAA-CTGATT    579
                     .||||||||.||.|||||||||||||||||.|| |||..|||| ||||||
BL02794___sea    534 CAATATTTACATTATGAATATCGGGCTTCCCGA-AAAGCGGAAGCTGATT    582

BSNT_03398___    580 TTAAAGCATGGCATGGGCTTTATTTTGACGCCGAAAAACTTTAATTCAGC    629
                     ||..|.||.||||||||.||||||||||.|||||||||.||||||||.||
BL02794___sea    583 TTGGAACACGGCATGGGGTTTATTTTGAAGCCGAAAAATTTTAATTCCGC    632

BSNT_03398___    630 AGCGACGATAGCAAATTTAGGGCAGCGTCAGGCCATTTTATTTGATGTTT    679
                     ||..|||||.||.|||.|.|||||..|.||.||.|||||||||||.||||
BL02794___sea    633 AGTAACGATTGCCAATCTCGGGCAAAGACAAGCGATTTTATTTGACGTTT    682

BSNT_03398___    680 CCAATGTGCTCGGGGTTTATCGGGATTCAGGAGAACCATCTTTGACACCA    729
                     |.|||||||||||.||.|||||.|||||.||||||||.|||.|..|.||.
BL02794___sea    683 CAAATGTGCTCGGCGTGTATCGAGATTCTGGAGAACCCTCTCTTTCGCCG    732

BSNT_03398___    730 ATTGCAAAACGGGATTTAAATGATGGGAGAGTGGCAGTATTTGTTCTTCC    779
                     .||||.|||.|||||||.|||||.|||.|.||.||.||.|||||.|||||
BL02794___sea    733 CTTGCGAAAAGGGATTTGAATGACGGGCGGGTCGCGGTTTTTGTCCTTCC    782

BSNT_03398___    780 G-----------CAAATTCACCATCCCGAAACGGCTGTTCA-AATTATTA    817
                     |           ||||           ||.||||| |.||| ..|.||..
BL02794___sea    783 GGTCATCAAGGACAAA-----------GAGACGGC-GATCAGGGTCATCG    820

BSNT_03398___    818 GCAATGTTCCAACCCTGGAAAATGCGATTAGAATGCCGACTGAATTTA-T    866
                     ||.|||||||.||.||||||||.||.||..|..|.||||..|||||.| |
BL02794___sea    821 GCGATGTTCCGACGCTGGAAAACGCCATCCGCGTACCGATGGAATTCATT    870

BSNT_03398___    867 CAAGAA----TCAGGATAAGGTGATAGGATGA    894
                     .|||||    .|||  .|||||||||..||||
BL02794___sea    871 AAAGAAAAGCACAG--CAAGGTGATAAAATGA    900


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