Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05935 and BL02959

See Amino acid alignment / Visit BSNT_05935 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:01
# Commandline: needle
#    -asequence dna-align/BSNT_05935.1.5803.seq
#    -bsequence dna-align/BL02959___cimH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05935-BL02959___cimH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05935-BL02959___cimH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05935
# 2: BL02959___cimH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1368
# Identity:     508/1368 (37.1%)
# Similarity:   508/1368 (37.1%)
# Gaps:         705/1368 (51.5%)
# Score: 1759.5
# 
#
#=======================================

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim      1 ATGGAAGCAAAAACAAAGGTACAACATATACCGATTCAAACAACAAAAGA     50

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim     51 ACAGGATGAAAATTTTTTTGCAAGAGCAATGAATGTTAAAATCGGCATCA    100

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    101 TTCCGCTGCCCGTATATTTGCTGCTCTTCGCTTTGATTGTGACGTTTGTC    150

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    151 TATATGCACGATCTGAAAAGCGACATTTTAACAGCCATTGCGGTTACGGG    200

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    201 CTTTTTCGGATTCACCTTCGCCCAAATCGGAAAGTCGCTGCCGCTTCTTC    250

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    251 GTTCTGTCGGCGGTGCCGCTATACTTGCGACGTTTATTCCTTCAGCTATC    300

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    301 GTCTATTACCATCTCATTCCCGATGACATTATCAAATCAACAACTGAATT    350

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    351 TACAGAAAACTCAAACTTTCTTTATTTGTTCATCTCTGCCATTGTAGTCG    400

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    401 GAAGCATTTTAGGAATGAAAAGAGAAACGCTGGTCAGGGCGTTCATTAAA    450

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    451 ATTTTTATTCCTCTGATTGCAGGGACCATTGCTGCAGCGGCAGTCGGTCT    500

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    501 GGCGGTCGGTACAATGCTCGGCCTCGGATTTCAGCATACGCTGCTGTACA    550

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    551 TTGTAATTCCGATCATGGCCGGAGGGGTTGGCGAGGGAGCTATTCCGCTG    600

BSNT_05935         0 --------------------------------------------------      0
                                                                       
BL02959___cim    601 TCCATCGGCTATTCGGAAATCATGCACATGTCACAAGGGGAAGCTTTTGC    650

BSNT_05935         1 -------------------ATGCTGGGCAGCTTGTGCGCGATTATTCTAG     31
                                        |||.|.||.|||||..||||..|.|||.|..
BL02959___cim    651 ACTTGTCATTCCTTCCATAATGTTCGGAAGCTTAAGCGCCGTCATTTTGT    700

BSNT_05935        32 CGGGATTGCTGAACCGAATCGGAAAGAAAAAACCGGAATGGACAGGCAAC     81
                     |.|||.|..|.||...||||||.||||||||.||.||||.||||||||||
BL02959___cim    701 CCGGAATTTTAAATGTAATCGGGAAGAAAAAGCCTGAATTGACAGGCAAC    750

BSNT_05935        82 GGCAAAGTGGACCGCTCCGA-AGAAGAGTC-CCCTG-CGCTGGAGGAATC    128
                     ||.|||||.|||||.|..|| ||..|.|.| |.|.| ||||.||  ||.|
BL02959___cim    751 GGAAAAGTTGACCGTTTTGATAGCGGGGACGCACAGCCGCTCGA--AAGC    798

BSNT_05935       129 ----ACAAAGCGGAC--AGCAAA---TGTTCAACCTTTCTTTATTTGCGG    169
                         |||||   |||  || |||   |.||.||.|||||....||||||.
BL02959___cim    799 CGCGACAAA---GACAAAG-AAAGCCTTTTTAATCTTTCCCACTTTGCGT    844

BSNT_05935       170 CAGGCGGTATCCTTGCTGTTTCTTTATACTTAGTCGGCATGCTCGCTCAC    219
                     ||||.||.||.||.||.||.||.|||||.||.|||||.|||||..|.||.
BL02959___cim    845 CAGGAGGCATTCTCGCCGTCTCATTATATTTGGTCGGTATGCTTTCACAT    894

BSNT_05935       220 GATTTTTTCGGTTTTCCGGCACCCGT--TGCCATGCTGTTACTGGCTGTT    267
                     ||.||.|||||.|||||.||||||||  ||  |||||..|.|||||||||
BL02959___cim    895 GACTTGTTCGGATTTCCAGCACCCGTCATG--ATGCTTCTGCTGGCTGTT    942

BSNT_05935       268 CTAATCAAGCTGTTCAGATTGGTGCCTGCCTC-----AATT--GAAAATG    310
                     ....|.||.||||     ||.||  |||.|||     ||||  |||||.|
BL02959___cim    943 GCCCTGAAACTGT-----TTCGT--CTGGCTCCGGCGAATTTGGAAAACG    985

BSNT_05935       311 GCGCGTTTGGAGTGTCCCGCTTCTTTTCAACAGCTGTGACCTACCCGCTT    360
                     ||||.|..||.|||||.||||||||||||||.||||||||.||.|||||.
BL02959___cim    986 GCGCCTACGGCGTGTCGCGCTTCTTTTCAACTGCTGTGACATATCCGCTG   1035

BSNT_05935       361 CTCTTTGCGATTGGGGTATCCATGACGCCGTGGGACAAGCTTGTCGCCGC    410
                     ||.|||||.|||||.||.||||||||.||||||||||||||..||||.||
BL02959___cim   1036 CTTTTTGCCATTGGCGTCTCCATGACACCGTGGGACAAGCTGATCGCAGC   1085

BSNT_05935       411 TTTTAACCTCAGCAATATTATTACGATTCTGTCTGTCGTTGTGACCATGA    460
                     ||||||..||..|||||||||||||||..|.||.|||||.||.||.||||
BL02959___cim   1086 TTTTAATATCGCCAATATTATTACGATCGTATCCGTCGTGGTCACGATGA   1135

BSNT_05935       461 TGGCCGTTGGCTTCTTCACTGGAAAATGGCTGAACATGTATCCGATTGAA    510
                     |.|||||.|||||.||..|.||.||.||||||||.|||||.|||||.|||
BL02959___cim   1136 TAGCCGTCGGCTTTTTTGCAGGGAAGTGGCTGAATATGTACCCGATCGAA   1185

BSNT_05935       511 ACCGCCATTATCAATGCGTGCCATTCTGGACAAGGCGGCACCGGAGACGT    560
                     |||||.||.||||||||.||||||||.||.||.||.||||||||.|||.|
BL02959___cim   1186 ACCGCGATCATCAATGCTTGCCATTCCGGCCAGGGAGGCACCGGCGACAT   1235

BSNT_05935       561 CGCTATTTTAAGCGCGGCGGAAAGGCTTGAGTTGATGCCGTTCGCCCAGG    610
                     |||.|||.|.|||||.||.||..|.||.|||.|.||||||||.|||||||
BL02959___cim   1236 CGCAATTCTCAGCGCCGCAGAGCGCCTCGAGCTTATGCCGTTTGCCCAGG   1285

BSNT_05935       611 TATCTACCCGCATCGGGGGCGCGATCACAGTGTCCTTAACCTTATTGCTG    660
                     |.||.||..|.|||||.||.|||||.||.||..|..|.||..|..|||||
BL02959___cim   1286 TGTCCACAAGAATCGGCGGAGCGATAACCGTTACGCTGACGCTGCTGCTG   1335

BSNT_05935       661 CTTCACCAGTTTTATTGA    678
                     ||...|||||||||||||
BL02959___cim   1336 CTAGCCCAGTTTTATTGA   1353


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