Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04999 and BL03007
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:11
# Commandline: needle
# -asequence dna-align/BSNT_04999___copB.1.5803.seq
# -bsequence dna-align/BL03007___yvgW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04999___copB-BL03007___yvgW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04999___copB-BL03007___yvgW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04999___copB
# 2: BL03007___yvgW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2270
# Identity: 1486/2270 (65.5%)
# Similarity: 1486/2270 (65.5%)
# Gaps: 328/2270 (14.4%)
# Score: 4553.5
#
#
#=======================================
BSNT_04999___ 1 ---------GTGAAACAGGAATACGTTCTGGACGGTTTGGATTGCAGCAA 41
|||||||||||.|||...||..||||..|.||.||||||||
BL03007___yvg 1 ATGGAAAAGGTGAAACAGGAGTACACGCTAAACGGCCTTGACTGCAGCAA 50
BSNT_04999___ 42 TTGTGCCCAAAAAATCGAAAATG---GAGTCAAAGGCATAAAAGGCATTG 88
|||.||.||||||||.||..||| .||.| ||.||.||.||.||||
BL03007___yvg 51 TTGCGCACAAAAAATTGAGCATGAGATAGCC---GGTATGAAGGGGATTG 97
BSNT_04999___ 89 ACGGATGCGCGGTAAATTTTGCGGCAAGCACCTTAACTGTCTCAGCCGAT 138
|.|..||..||||.||||||||..|||||||..|.||||||..||.|||
BL03007___yvg 98 AAGCGTGTTCGGTCAATTTTGCAACAAGCACGCTGACTGTCCAAGTCGA- 146
BSNT_04999___ 139 GGGAAA--------GAAGAGCAATGGGTCACGAATAAAGTAGAGAAAAAA 180
..||| ||||| ||.| ||...||||| ||.||||||||
BL03007___yvg 147 -CCAAAACAGCGGCGAAGA-CATT---TCTTTAATAA--TAAAGAAAAAA 189
BSNT_04999___ 181 GT----GAAATCAATTGATCCGCATGT-AACGGTTCGCCAAAAGCATATA 225
|| ||.||| ||.|||||.|| ||||...|||..||.|
BL03007___yvg 190 GTAACCGAGATC----GAACCGCACGTCAACGCGACGCTGAAGG------ 229
BSNT_04999___ 226 AAG----AAATCAG-------CTGA-------TGATGGCTATCGTAATCG 257
||| |||.||| |.|| .||.||.| |||...
BL03007___yvg 230 AAGGGACAAAACAGGCCCCACCAGAAAGCGACGGACGGTT----TAAAAA 275
BSNT_04999___ 258 AATGGT--CAA---TATGCTGATCAGAA-----------TGGCGGC-GGC 290
||.||| ||| | ||||| |||.| | ||||| |||
BL03007___yvg 276 AACGGTTGCAAGGCT-TGCTG--CAGGAACCGTTCTCGGT-GCGGCGGGC 321
BSNT_04999___ 291 TGTC--ATTCTCGGCGCAACGGCA---TATTTGGTTCATTCGGGAACCAT 335
|.|| .|||.|||||..||.||| .|.|.|.|||.||
BL03007___yvg 322 TTTCTGCTTCCCGGCGGCACCGCAGCCGAGTGGCTTCTTT---------- 361
BSNT_04999___ 336 TGAACTTTTCCTTTTCCTCGCTGCTTATTTGATCATCGGCGGTGACAT-- 383
||||||| .|||||..|.|||||||||||.||..|
BL03007___yvg 362 -----------TTTTCCT---AGCTTACCTCATCATCGGCGGCGATGTCG 397
BSNT_04999___ 384 TATGATCCGCGCAGTCAAAAACATCATCCGCGGTCAGGTGTTTGATGAGC 433
||| |..|.||.||||||||||||.|.|||||.|.|||.||||||||||
BL03007___yvg 398 TAT--TAAGGGCCGTCAAAAACATCTTTCGCGGCCGGGTTTTTGATGAGC 445
BSNT_04999___ 434 ATTTCTTAATGGCTCTTGCCACAATCGGCGCCTTTCTGATTCAGCAATAC 483
|.||.||||||.|..|.|||||..|.||.||.|||.|.||||||||.||.
BL03007___yvg 446 ACTTTTTAATGACGATCGCCACTCTGGGGGCATTTATTATTCAGCAGTAT 495
BSNT_04999___ 484 CCTGAGGGCGTCGCAGTTATGCTGTTTTATCAAATCGGTGAGCTTTTTCA 533
||.|||||.||.||.|||||||||||.||||||||.||.|||||.||.||
BL03007___yvg 496 CCCGAGGGTGTGGCGGTTATGCTGTTCTATCAAATAGGCGAGCTGTTCCA 545
BSNT_04999___ 534 AGGTGCCGCGGTCAGCCGTTCCAGAAAATCAATTAGTGCGTTAATGGACA 583
.||.||||||||||.|||.|||.|.||.||.||.||.|..||.|||||||
BL03007___yvg 546 GGGAGCCGCGGTCACCCGCTCCCGGAAGTCGATCAGCGATTTGATGGACA 595
BSNT_04999___ 584 TACGGCCTGATTACGCCAATC-TCAAAACAAA----GAACGGCATCGAAC 628
|.||.||.||.||.||||||| |||||.|.|| |||||| ||.||
BL03007___yvg 596 TCCGTCCCGACTATGCCAATCTTCAAACCGAAGGCGGAACGG--TCAAA- 642
BSNT_04999___ 629 AGGTTTCCCCGGAGGACGTTCAGA-CAGGAGACATCATTGTGGTTAATCC 677
||.||.||.||.|| |.|||.| |.||.||.|||||..|.||.||.||
BL03007___yvg 643 --GTGTCTCCCGATGA-GGTCAAAGCCGGCGATATCATCATCGTCAAGCC 689
BSNT_04999___ 678 GG--GAGAAAGCATACCCCTGGACGGTAAGGT-CGTGCAAGGGTCAGCGA 724
|| ||||||| |.||.||.|||||.||.|| ||.|| |||...|.||.
BL03007___yvg 690 GGGAGAGAAAG--TGCCGCTTGACGGCAAAGTGCGGGC-AGGCAAATCGC 736
BSNT_04999___ 725 TGGTTGATACATCTGCTTTAACAGGTGAGTCCGTTCCGAGAAAAGCTGCG 774
|.||.|||||.||.||.|||||.||.||.||||||||||||.||||.||.
BL03007___yvg 737 TTGTCGATACGTCCGCATTAACCGGAGAATCCGTTCCGAGAGAAGCCGCT 786
BSNT_04999___ 775 GTAGGACAAGATGTAATGTCAGGCTTTATCAATCAAAACGGCGTTCTGCA 824
...|||..|||.||..||...||.|||.||||..||||||||||.||..|
BL03007___yvg 787 CCCGGAACAGAGGTGCTGAGCGGATTTGTCAACAAAAACGGCGTGCTTGA 836
BSNT_04999___ 825 TATTGAAGT-CACAAAGAGCTATCAA--GAATCAGCAGTATCAAAAATAT 871
..|.||||| .||||||| ||..| ||||||.|.||.|||||.||..
BL03007___yvg 837 AGTGGAAGTGGACAAAGA---ATACAGTGAATCAACCGTTTCAAAGATTC 883
BSNT_04999___ 872 TAGACTTGGTTCAGAATGCGAGCAGCCGTAAAGCCCGGACAGAAAACTTT 921
|.|||.|.|||||||||||.||||||.|.|||||....|||||.||.|||
BL03007___yvg 884 TTGACCTCGTTCAGAATGCCAGCAGCAGAAAAGCGAAAACAGAGAATTTT 933
BSNT_04999___ 922 ATCACGAAGTTTGCCAAGTATTATACACCTGCTGTTGTGATCATCGCGGT 971
|||||.||.||.|||||||||||.||.|||...||||||||.||||||.|
BL03007___yvg 934 ATCACCAAATTCGCCAAGTATTACACGCCTTTCGTTGTGATAATCGCGCT 983
BSNT_04999___ 972 ATTGCTGGCCTTTGTTCCGCCGCTTGTTCTTTCTGGCGCCGCGCTTTCCG 1021
..|.||.||.|||||.||||||||..||.||||.||||||..|||.||.|
BL03007___yvg 984 TCTTCTCGCTTTTGTCCCGCCGCTGATTATTTCAGGCGCCCTGCTGTCAG 1033
BSNT_04999___ 1022 ATTGGGTGTACCGCGCGCTTATCTTTTTAGTGATTTCTTGTCCTTGTGCG 1071
||||||||||||||||.|||.|||||||.||.|||||||||||.||.|||
BL03007___yvg 1034 ATTGGGTGTACCGCGCCCTTGTCTTTTTGGTCATTTCTTGTCCGTGCGCG 1083
BSNT_04999___ 1072 CTTGTTGTCTCCATTCCGCTCGGTTTCTTCGGCGGAATCGGAGCGGCCTC 1121
||.||.||.||||||||||||||.||.||||||||.|||||||||||.||
BL03007___yvg 1084 CTCGTCGTTTCCATTCCGCTCGGCTTTTTCGGCGGCATCGGAGCGGCGTC 1133
BSNT_04999___ 1122 AAAGGCCGGAGTGCTTGTAAAGGGAAGCAATTATTTAGAAGCTTTGAATC 1171
|||.||.||..|.||.||.||.||..||||||||||||||||..|||||.
BL03007___yvg 1134 AAAAGCAGGTATACTCGTGAAAGGCGGCAATTATTTAGAAGCGCTGAATG 1183
BSNT_04999___ 1172 AAGTCAAATACGCGGTGTTTGATAAAACGGGAACACTAACAAAA--GGAA 1219
|.|||||||||||.||.|||||.|||||.||.||..|||||||| ||||
BL03007___yvg 1184 ATGTCAAATACGCCGTTTTTGACAAAACAGGCACTTTAACAAAAGGGGAA 1233
BSNT_04999___ 1220 GCTTTGAAG-TGACAGAAATCAAAC--CCGC--GGAAG----GTTTTACA 1260
||||..| || ||||.| .||| |.||| || ||
BL03007___yvg 1234 --TTTGCCGTTG-------TCAAGCTGTCGCCTGCAAGCCATGT----CA 1270
BSNT_04999___ 1261 AAG--GATAGATTACTTGAA---GCGGCGGCATACGCTGAGCTTCATTCA 1305
||| |||..|.|.|||||| ||||| ||.| ||.||.|.| |||.
BL03007___yvg 1271 AAGAAGATGAACTGCTTGAATATGCGGC-GCTT--GCCGAACAT--TTCT 1315
BSNT_04999___ 1306 CAG--CATCCGATTGCTGAATCTGTGCGTAAAGCTTACGGGAA------- 1346
|.| ||||||||.||.||.||..|.|||.||||.||||||||
BL03007___yvg 1316 CCGGCCATCCGATCGCCGAGTCGATCCGTGAAGCATACGGGAAGGAAGTA 1365
BSNT_04999___ 1347 -AATGCTTTCCTCCGAT--GAGATT-----GAGTCATACGAAGAAATCTC 1388
|| ||...||.| || .||||| ||| ||| .|
BL03007___yvg 1366 CAA-GCGGACCGC--ATCAAAGATTACAGCGAG----ACG--------GC 1400
BSNT_04999___ 1389 CGGTCACGGCATTTTTGCAAAG-----GTAAATGGAAATGAGATCCTTGC 1433
|||...||||.| ||.|| |||.|.|||...|..||..|.||
BL03007___yvg 1401 CGGCTTCGGCGT-----CAGAGCGGTTGTAGACGGAGCCGTCATTTTAGC 1445
BSNT_04999___ 1434 CGGGAATAAAAAGCTCATG--GAAAGAGAACAAATTGAGGATGTCCCGG- 1480
|||||||...|||||.||| ||||| ||||
BL03007___yvg 1446 CGGGAATGCCAAGCTTATGAAGAAAG-------------------CCGGC 1476
BSNT_04999___ 1481 -------ATGAAAATGCTGGAA----CAATCGTACACGTTGCTGTTGATC 1519
||.|||| |||| .|||||.| || ||.||||.||.
BL03007___yvg 1477 ATACAGTATCAAAA----GGAAAGTGAAATCGGA-AC--TGTTGTTTATG 1519
BSNT_04999___ 1520 AA--CGC------------TATGCCGGAGCAATCATCATAGCGGATGAGA 1555
.| ||| ||| |||..|.||..||||.||.||.||.|
BL03007___yvg 1520 TAGCCGCCGGCGATACGTTTAT--CGGCTCGATTGTCATCGCTGACGAAA 1567
BSNT_04999___ 1556 TAAAGGAAGACGCAGCACAAGCGGTTGCTGATCTGAAGTCGCTT------ 1599
|.||.||.||.|| |||||| ||| ||||| .|||||
BL03007___yvg 1568 TCAAAGAGGATGC----CAAGCG--TGC-GATCT----CCGCTTTGAAAA 1606
BSNT_04999___ 1600 -----GGGATCAAACAGACAGCTATGCTGACGGGTGATTCGAAACAAACG 1644
||.||.|||.|.||.|..|||||||||||.||..|||||.|.||.
BL03007___yvg 1607 AAGCGGGTATTAAAAAAACGGTGATGCTGACGGGCGACGCGAAAGACACC 1656
BSNT_04999___ 1645 GGAGAAGCCGTCGGAAAACAGCTTGGGATTGGTGAGGTATATGCAGAGCT 1694
||.||.||.|||||..|||||||....||||.|||.||..||||.|||||
BL03007___yvg 1657 GGTGAGGCGGTCGGCGAACAGCTGTCCATTGATGAAGTGCATGCGGAGCT 1706
BSNT_04999___ 1695 GCTGCCGCAAGATAAAGTCG--CGCAGGTCGAAGCATTGG--AAGC-TAA 1739
.||.|||||..|.||.||.| ||.| |.|||.||||.| |||| .||
BL03007___yvg 1707 ACTTCCGCAGCACAAGGTGGACCGTA--TTGAAACATTAGATAAGCAAAA 1754
BSNT_04999___ 1740 GCTTTCACCTAATGAAAAACTCATTTTTGTCGGTGACGGCATCAATGATA 1789
.||| ||.||.|||||.||..||||||..||.|||||||||||.||||
BL03007___yvg 1755 ACTT---CCAAAAGAAAAGCTGCTTTTTGCAGGAGACGGCATCAACGATA 1801
BSNT_04999___ 1790 CGCCGGTGCTT-GCCCGCGCAGATATAGGGATCGCGATGGGAGGCCTTGG 1838
||||||| ||| ||..|.||.|||||.|||.|.||.|||||||||||.||
BL03007___yvg 1802 CGCCGGT-CTTGGCGAGAGCGGATATCGGGGTTGCCATGGGAGGCCTCGG 1850
BSNT_04999___ 1839 CTCAGACGCCGCAGTAGAAGCCGCAGACATCGTGCTGATGACAGATCAGC 1888
.||.||.||.|||||.|||||.||.||.||.|||.|.|||||.|||||||
BL03007___yvg 1851 TTCTGATGCGGCAGTCGAAGCGGCTGATATTGTGATCATGACGGATCAGC 1900
BSNT_04999___ 1889 CGTCAAAAATAGCGGAAGCGATTCGGATTGCGAAACGGAC-ACGGCGAAT 1937
|.||||||||.||||||||.||..|.|||||.||.||||| |.|.|| ||
BL03007___yvg 1901 CTTCAAAAATTGCGGAAGCCATCAGCATTGCCAAGCGGACGAGGACG-AT 1949
BSNT_04999___ 1938 CGTGTGGCAAAACATCGGCTTTGCTTTAGGTGTGAAAGCGA-TCTTTCTC 1986
.||.|||||.||.||....|||||..|.||.||.|||| || |.||||||
BL03007___yvg 1950 TGTCTGGCAGAATATTATTTTTGCACTCGGCGTTAAAG-GAGTTTTTCTC 1998
BSNT_04999___ 1987 ATTCTTGGTGCATTTGGAATTGCGACCATGTGGGAAGCGGTTTTCTCAGA 2036
||.||.|||||.|||||.||.|||||.|||||||||||.||.||.|||||
BL03007___yvg 1999 ATCCTGGGTGCTTTTGGCATCGCGACGATGTGGGAAGCCGTCTTTTCAGA 2048
BSNT_04999___ 2037 TGTCGGCGTTACACTGCTTGCTGTGGCGAACGCCATGCGCGTCATGCGTC 2086
.|||||.|||||.||.||.|||||....||.||.|||.|.|| ||
BL03007___yvg 2049 CGTCGGTGTTACCCTTCTGGCTGTTTTAAATGCGATGAGGGT-AT----- 2092
BSNT_04999___ 2087 TCAA----AAACAAA--TAA 2100
|.|| |||.||| |||
BL03007___yvg 2093 TAAAAGTGAAAGAAATGTAA 2112
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