Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00986 and BL03095

See Amino acid alignment / Visit BSNT_00986 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_00986___ydhE.1.5803.seq
#    -bsequence dna-align/BL03095___ydhE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00986___ydhE-BL03095___ydhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00986___ydhE-BL03095___ydhE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00986___ydhE
# 2: BL03095___ydhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1252
# Identity:     862/1252 (68.8%)
# Similarity:   862/1252 (68.8%)
# Gaps:         101/1252 ( 8.1%)
# Score: 2780.5
# 
#
#=======================================

BSNT_00986___      1 ATGAAGACAGTAT--TGATTTTGAATTTTCCTGCGGAAGGCCATGTGAAT     48
                     ||||  |.|.|||  |.||..|.||||||||.||||||||.|||||.|||
BL03095___ydh      1 ATGA--AAAATATTCTAATCGTCAATTTTCCGGCGGAAGGTCATGTCAAT     48

BSNT_00986___     49 CCTACCTTAGGCATTACAAAAGCGTTTTCCGATA-AGG-GATATGATGTC     96
                     |||||.|||||.||.||.|||||.|||.|.||.| ||| ||.|  ||||.
BL03095___ydh     49 CCTACATTAGGGATCACCAAAGCATTTGCTGACAGAGGCGACA--ATGTG     96

BSNT_00986___     97 CATTATATATCCACTGAAAAATATAAAAAACGATTAGAAGCAGCG--GGA    144
                     ||.|||.|.||.||.|||||.||||||.|..|..|.||.|  |||  |||
BL03095___ydh     97 CACTATCTTTCAACAGAAAAGTATAAAGACAGGCTGGAGG--GCGTCGGA    144

BSNT_00986___    145 GCAACGGTCCATCTTCACCGGGATCTGCTGCG-AACGACACCTATTCATG    193
                     ||.||.||.|||.|..||...||||||.||.| |||| |.|.||||.|| 
BL03095___ydh    145 GCTACCGTTCATTTATACAAAGATCTGGTGAGAAACG-CGCATATTGAT-    192

BSNT_00986___    194 TCGGTTCGCCCAAT---------GGCATTCTTGATTTCGTGAAAATCCAT    234
                             ||.|||         |||.|||||||.||..|.|||||.|||
BL03095___ydh    193 --------CCGAATTCACCGTCCGGCCTTCTTGAATTTTTAAAAATTCAT    234

BSNT_00986___    235 ATCAAAACGTCATTGGACATTTTACAGATTGTCAAAGACTTATCTAAGAG    284
                     .|||||||.||..||.|.|||.||.|.|||||.|||||..|.||.||.||
BL03095___ydh    235 CTCAAAACCTCGCTGTATATTCTAGACATTGTAAAAGAGCTGTCCAAAAG    284

BSNT_00986___    285 CATTCAATTTGATTTTGTTTATTATGATAAATTCGGCGCGGGGGAATTGG    334
                     ||||...||.|||.|.||.||||||||.|.||||||.|||||.|||||||
BL03095___ydh    285 CATTTCGTTCGATGTCGTGTATTATGACACATTCGGTGCGGGTGAATTGG    334

BSNT_00986___    335 TAAGGGATTACTTAGATATTCCAGGAGTCTCTTCATCGGCGTC-TTTCTT    383
                     |.||||||||.||..|.|||||.|||.||.||||.|||||.|| |||| |
BL03095___ydh    335 TCAGGGATTATTTGAACATTCCGGGAATCGCTTCGTCGGCTTCATTTC-T    383

BSNT_00986___    384 GTTTGGCGAGGAGCACCTGAAAATCCTGCCGCTGCATCCGGAGTCTGGAG    433
                     .||.||..|.||.||...|||.||.||||||.||||||||||.||.||.|
BL03095___ydh    384 CTTCGGACAAGAACATAAGAAGATTCTGCCGTTGCATCCGGATTCAGGCG    433

BSNT_00986___    434 CGCCGCTTGAATTGGATCAAGAGTGCGAAGATCTTTTGGCAAAAATGAAA    483
                     ||..|||..|.|||||..||||.||.||.||.||..|.||..||.|||||
BL03095___ydh    434 CGGAGCTGCACTTGGACAAAGAATGTGAGGACCTGCTTGCGGAACTGAAA    483

BSNT_00986___    484 GAAACGTACGGTGTTGCCCC---GAAAAACCTGGTTCAATTCATGAACAA    530
                     ||||.||||||.||..|.||   |.|.|  |.|| .||.||.||||.|||
BL03095___ydh    484 GAAAAGTACGGCGTCTCGCCTAGGCATA--CAGG-ACAGTTTATGAGCAA    530

BSNT_00986___    531 TAAAGGGGAATTGAACGTAGTGTATACAAGCCGTTATTTTCAGCCAGAAA    580
                     |.|.|.|||..|||.|||.||||||||||||||.|||||||||||.||.|
BL03095___ydh    531 TCAGGCGGAGCTGACCGTTGTGTATACAAGCCGGTATTTTCAGCCTGACA    580

BSNT_00986___    581 GTGATCGTTTCGGGGATGAATGT-CTGTTTATCGGGCCAAGCTTTCCAAA    629
                     |.|..|||||.||||||| |||| |||||||||||.||..|.||||||||
BL03095___ydh    581 GCGGCCGTTTTGGGGATG-ATGTGCTGTTTATCGGCCCGCGTTTTCCAAA    629

BSNT_00986___    630 GAGAGCGGAAAAAACGGATTTCCCGATTGAACAGCTAAAAGATGAGAGTG    679
                     |.|...|||.||.||.|||||.|||.|.|||..|.|.||..||||||..|
BL03095___ydh    630 GCGCCTGGACAAGACCGATTTTCCGGTAGAATCGTTGAAGAATGAGAAAG    679

BSNT_00986___    680 TCATTTATATTTCAATGGGGACTGTACTGGATCATACAGAGGATTTCTTC    729
                     |||||||||||||||||||.||.|||||.|...|.||.|.||||||.|||
BL03095___ydh    680 TCATTTATATTTCAATGGGAACCGTACTTGGCAAAACTGCGGATTTTTTC    729

BSNT_00986___    730 AACCTTTGTATTGATGCATTTTCAGGCTTT-AACGGAAAAGTCGTCATCG    778
                     ||..|.||.|||||||| |||||..|.||| .||||.||.||.|||||||
BL03095___ydh    730 AATATGTGCATTGATGC-TTTTCGTGATTTCGACGGCAAGGTTGTCATCG    778

BSNT_00986___    779 CTGCCGGAGAAAAAGCGGAC----CTGACCAAATTAAAGCAGGCGCCGGA    824
                     |.||.||.||||||.|||||    |.|   ||||||||| |.|.||||||
BL03095___ydh    779 CCGCTGGCGAAAAATCGGACTACGCGG---AAATTAAAG-AAGTGCCGGA    824

BSNT_00986___    825 AAACTTTATCATTGCTCCGTATGTCCCTCAGCTGGAAGTGCTGGAGCAAT    874
                     ..|.||||||||.||.||||||||.||.||..|.||.|||||..|..|..
BL03095___ydh    825 GCATTTTATCATCGCCCCGTATGTGCCGCAATTAGAGGTGCTTAAAGAGG    874

BSNT_00986___    875 CGGATGTTTTCATTACACACGGCGGAATGAACAGCGTAAACGAAGGCATT    924
                     |.|||||.|||||.||.||||||||.|||||||||||.||.||||||||.
BL03095___ydh    875 CCGATGTGTTCATCACGCACGGCGGCATGAACAGCGTCAATGAAGGCATC    924

BSNT_00986___    925 CATTTCAGCGTGCCACTGGTTGTCATGCCTCATGACAAGGATCAGCCGAT    974
                     ||||.|.|.||.||..|||||||..|.||.|||||.||.|||||||||||
BL03095___ydh    925 CATTACCGTGTCCCGATGGTTGTGCTTCCGCATGATAAAGATCAGCCGAT    974

BSNT_00986___    975 GGTGGCGCAGCGTCTCTCTGAA----CTCCATGCAGGCTATGTCATC--T   1018
                     |.|.||.|||||   || ||||    ||..||||.||  ||.||.||  |
BL03095___ydh    975 GATCGCCCAGCG---CT-TGAAAGAGCTGAATGCGGG--ATATCCTCTGT   1018

BSNT_00986___   1019 CTAAAGATGAAGTCAATGCCCAAATATTAAAACAGGCCGTAGATGAGGTT   1068
                     .|..|||.|||||.|||||..|||.|||.|.|.|.||.|.|||..|.|  
BL03095___ydh   1019 TTGCAGAAGAAGTGAATGCTGAAAGATTGAGAGATGCAGCAGAACAAG--   1066

BSNT_00986___   1069 TTGCGCA---ACGATCAGTATATGGCAGGCATTAAAAAAATCAATCAAAG   1115
                      |||.||   |||...|.|||..||.|||.|||.|||||||..||.||||
BL03095___ydh   1067 -TGCTCACTGACGGAAAATATCAGGAAGGTATTCAAAAAATTGATGAAAG   1115

BSNT_00986___   1116 CTTCAAAGAATGTATGGACATGGAAGAAGTGATGGAGCGGATTGATGAGT   1165
                     |||||...|.||.||||||||..||||.|...|||.|||.||||||||.|
BL03095___ydh   1116 CTTCAGCAACTGCATGGACATTAAAGATGCATTGGCGCGTATTGATGAAT   1165

BSNT_00986___   1166 TGATTCGCC-----AAAAA--------------AACA----------AAT   1186
                       ||.||.|     |||||              ||||          |.|
BL03095___ydh   1166 --ATACGGCGCGGAAAAAAGTCGCTGCAGCCATAACAGAAAGCCGCTACT   1213

BSNT_00986___   1187 AA   1188
                     ||
BL03095___ydh   1214 AA   1215


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