Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04452 and BL03289

See Amino acid alignment / Visit BSNT_04452 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_04452___ytmA.1.5803.seq
#    -bsequence dna-align/BL03289.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04452___ytmA-BL03289.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04452___ytmA-BL03289.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04452___ytmA
# 2: BL03289
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 822
# Identity:     569/822 (69.2%)
# Similarity:   569/822 (69.2%)
# Gaps:          69/822 ( 8.4%)
# Score: 1945.0
# 
#
#=======================================

BSNT_04452___      1 ---TTGATTGTAGAGAAAAGAAGATTTCCGTCGCCAAGCCAGCATGTGCG     47
                        |.||   ||||.||||||||.|||||.|||||.|.|.|..|.|||||
BL03289            1 ATGTGGA---TAGAAAAAAGAAGGTTTCCATCGCCGAACAAAGAGGTGCG     47

BSNT_04452___     48 TTTGTATACGATCTGCTATCTGTCAAATGGATTACGGGTTAAGGGGCTTC     97
                     |.|||.|.|..||...||.||.|||.|.|||.|...|||||||||||||.
BL03289           48 TCTGTTTTCCGTCACATACCTTTCACAAGGACTCAAGGTTAAGGGGCTTT     97

BSNT_04452___     98 TGGCTGAGCCGGCGGAACCGGGACAATATGACGGATTTTTATATTTGCGC    147
                     ||||.||.|||||.|..||.|||.|.||||||||.|||||.|||||||||
BL03289           98 TGGCCGAACCGGCCGCTCCCGGAAATTATGACGGGTTTTTGTATTTGCGC    147

BSNT_04452___    148 GGCGGGATTAAAAGCGTGGGCATGGTTCGGCCGGGCCGGATTATCCAGTT    197
                     |||||.|||||||.|||.||.|||||..|.||||||||.||..|||||||
BL03289          148 GGCGGAATTAAAAACGTCGGGATGGTCAGACCGGGCCGAATCGTCCAGTT    197

BSNT_04452___    198 TGCATCCCAAGGGTTTGTGGTGTTTGCTCCTTTTTACAGAGGCAATCAAG    247
                     .||.||.||.||.|||||.||..|||||||.||||||||.||||||||||
BL03289          198 CGCTTCACAGGGCTTTGTCGTTCTTGCTCCGTTTTACAGGGGCAATCAAG    247

BSNT_04452___    248 GAGGAGAAGGCAATGAGGATTTTGCCGGAGAAGACAGGGAGGATGCATTT    297
                     |||||||||||.|||||||||||||.||..|.|||.||||.|||||.|||
BL03289          248 GAGGAGAAGGCGATGAGGATTTTGCAGGTAATGACCGGGAAGATGCTTTT    297

BSNT_04452___    298 TCTGCTTTTCGCCTGCTTCAGCAGCACCCAAATGTCAAGAAGGATAGA--    345
                     .|.||||||||.||.||||||.|||| |.||.||..|  |||||..||  
BL03289          298 GCCGCTTTTCGTCTTCTTCAGAAGCA-CGAACTGGTA--AAGGACGGACG    344

BSNT_04452___    346 -GTCCACATCTTCGGCTTTTCTCGCGGCGGAATTATGGGAATGCTT-ACT    393
                      ||.|||||.||.||||||||.|||||||||||.|||||.|| ||| ||.
BL03289          345 CGTTCACATTTTTGGCTTTTCCCGCGGCGGAATCATGGGCAT-CTTAACG    393

BSNT_04452___    394 GCTATCGAAATG--GGCGGGCAGGCAGCTTCATTTGTTTCCTGGGGAGGC    441
                     ||.|||||||||  .||.|  .|||.|||||.|||||.||.|||||.||.
BL03289          394 GCAATCGAAATGAAAGCAG--CGGCCGCTTCGTTTGTGTCTTGGGGCGGT    441

BSNT_04452___    442 GTCAGTGATATGATTCTTACATA-CGAGGAGCGGCAGGATTTGCGGCGAA    490
                     |||||.||.|||.|..|.||.|| || .||.||..|.|||||||||||.|
BL03289          442 GTCAGCGACATGGTCATGACCTATCG-CGAACGAAAAGATTTGCGGCGGA    490

BSNT_04452___    491 TGATGAAAAGAGTCATCGGCGGAACACCGAAAAAGGTGCCTGAGGAATAT    540
                     |||||||..|.|||||||||||.||.||..|||||||.||.||.|..|||
BL03289          491 TGATGAAGCGGGTCATCGGCGGGACGCCTGAAAAGGTTCCCGAAGCGTAT    540

BSNT_04452___    541 CAATGGAGGACACCGTTTGACCAAGTAAACAAAATTCAGGCTCCCGTGCT    590
                     .||||||||||.||.||||||.|..|..|.||.|||.|.||.||||||||
BL03289          541 GAATGGAGGACGCCTTTTGACGAGCTGGAGAAGATTGAAGCGCCCGTGCT    590

BSNT_04452___    591 GTTAATCCATGGAGAAAAAGACCAAAATGTTTCGATTCAGCAT-----TC    635
                     .||.|||||.||||.|||.||..|||||||.||.||..|||||     .|
BL03289          591 TTTGATCCACGGAGCAAACGATGAAAATGTCTCCATCGAGCATGCGCGGC    640

BSNT_04452___    636 CTATTTATTAGAAGAGAAGCTAAAACAACTGC------ATAAGCCGGTGG    679
                     .|.||           .|||...|||..||||      |.|||.|.||||
BL03289          641 GTCTT-----------GAGCGTGAACTTCTGCGAAGGAACAAGTCTGTGG    679

BSNT_04452___    680 AAACATGGTACTACAGTACATTCACACATTATTTCCCGCCAAAAGAAAAC    729
                     |.||.|||||.|.|||...||..||.||.|||||.||.||....||||||
BL03289          680 ATACGTGGTATTTCAGCCAATATACCCACTATTTTCCTCCGCGCGAAAAC    729

BSNT_04452___    730 CGGCGTATCGTGCGGCAGCTCACACAATGGATGAAAAACCG--CT--GA-    774
                     .||||.||.||..|..|..|..|.|||||||||||||.|||  ||  || 
BL03289          730 AGGCGGATTGTTAGAGAATTATCCCAATGGATGAAAAGCCGTCCTTGGAC    779

BSNT_04452___    774 ----------------------    774
                                           
BL03289          780 AAGTTATGGTAAACTAAAGTAA    801


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04452 and BL03289

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
