Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05383 and BL03371
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:31
# Commandline: needle
# -asequence dna-align/BSNT_05383___yviE.1.5803.seq
# -bsequence dna-align/BL03371___yviE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05383___yviE-BL03371___yviE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05383___yviE-BL03371___yviE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05383___yviE
# 2: BL03371___yviE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity: 412/613 (67.2%)
# Similarity: 412/613 (67.2%)
# Gaps: 83/613 (13.5%)
# Score: 1318.5
#
#
#=======================================
BSNT_05383___ 1 ATGCAGATTCCCAGATTGATTATGCATAGTGTTCAAGGAAAAATTGGTTT 50
|||.||||.||.||..||||.|||||.|.|.|.|..||....||.|||||
BL03371___yvi 1 ATGGAGATGCCTAGGCTGATCATGCAAAATATCCCCGGCCGCATCGGTTT 50
BSNT_05383___ 51 AACAACGACGCCTGCCAG-CTTAAAAATGGAGCAGCCTCAAGCTGATCTA 99
|||||||||||| ||||| .||.||||||||.|||||.|..||||| ||.
BL03371___yvi 51 AACAACGACGCC-GCCAGATTTGAAAATGGAACAGCCGCGCGCTGA-CTT 98
BSNT_05383___ 100 G-AGATCGAACAGCCGAGTGCGGAAATGGAAAT----ATCGGTGACACCT 144
| |.|||||.||||||...||.|||.||.|.|| |.| ||.|||
BL03371___yvi 99 GAAAATCGAGCAGCCGCCGGCCGAACTGAAGATTACAACC----ACCCCT 144
BSNT_05383___ 145 GGAAAACTCACGATTGACCAGACACAAGCATGGGAAGAATTAGACAGAAA 194
..|||.||||||||||||||||||.||||.||||||||.|||||.|||||
BL03371___yvi 145 TCAAAGCTCACGATTGACCAGACAAAAGCTTGGGAAGACTTAGAAAGAAA 194
BSNT_05383___ 195 GCATGTTTTCAAGAGAATTGAAGAAGCCGCCCAACAAGGGC-ATGAGGAT 243
||||.|.||.||.||.||||||||||..||.||.| ||||| ||.|||||
BL03371___yvi 195 GCATATATTTAAAAGGATTGAAGAAGGGGCGCAGC-AGGGCTATCAGGAT 243
BSNT_05383___ 244 GTAATGAAG------GGAATAGCGCGCACGGCAGAAGAAGGCGACGAGCT 287
|| | |||||.||.||.||.||.||||||||.|||||..|
BL03371___yvi 244 ----TG--GCTCGCCGGAATGGCACGGACCGCTGAAGAAGGAGACGAAAT 287
BSNT_05383___ 288 TATGAGAATTGAAAATAAAGGGAACCCAAT-CGCTT-CA---CAAGCAAG 332
.|||.|.||.||||...|||| |||| ||||| || ||.||.||
BL03371___yvi 288 GATGCGGATCGAAATCGAAGG-----CAATCCGCTTGCAGACCAGGCGAG 332
BSNT_05383___ 333 GAGGAAC------TCTGAAATGCACCAAATTCAATTAGGCGAAAATTATG 376
|.||||| .||||| |..||||||.|.||||...|||.|.
BL03371___yvi 333 GCGGAACAGCGAGCCTGAA------CCGATTCAAATCGGCGTTCATTTTA 376
BSNT_05383___ 377 CTCCTTCTCTATCT---AGGGTGAAAATACAATATACTCCGTCACAGCT- 422
|.||.|| ||.| |||||||||||...||| ||...|.|||
BL03371___yvi 377 CGCCGTC---ATTTGACAGGGTGAAAATCGCATA-----CGAACCGGCTA 418
BSNT_05383___ 423 ---TGATGTTCAGATT------ACGCCGCGAAAGCCTGTTATTCAGGCTG 463
||| |.||| ||||||||.||||||.|.||..|.||..
BL03371___yvi 419 AAGTGA-----ACATTGAAGCGACGCCGCGCAAGCCTATCATCGAAGCAA 463
BSNT_05383___ 464 AGCCGCATAAGCCAATTGTTGAATATACGCCAGGAAATGTTAAGGTTGAC 513
.||||.||||.||..|||||.|.||||||||.||.|.|||.|||||||||
BL03371___yvi 464 CGCCGAATAAACCGGTTGTTAACTATACGCCGGGCAGTGTGAAGGTTGAC 513
BSNT_05383___ 514 ATGCTCCAATACCCTGATTTAAATATAGATGTAGAATACCCGAAAGAATC 563
|||||||||||.||.||..||||.||||||||.||||||||.|||
BL03371___yvi 514 ATGCTCCAATATCCGGAGGTAAAAATAGATGTGGAATACCCAAAA----- 558
BSNT_05383___ 564 ACCCGAAAAGTAA 576
.||||||||
BL03371___yvi 559 ----CAAAAGTAA 567
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