Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05341 and BL03398

See Amino acid alignment / Visit BSNT_05341 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:27
# Commandline: needle
#    -asequence dna-align/BSNT_05341___yvlC.1.5803.seq
#    -bsequence dna-align/BL03398___yvlC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05341___yvlC-BL03398___yvlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05341___yvlC-BL03398___yvlC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05341___yvlC
# 2: BL03398___yvlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 212
# Identity:     136/212 (64.2%)
# Similarity:   136/212 (64.2%)
# Gaps:          25/212 (11.8%)
# Score: 397.0
# 
#
#=======================================

BSNT_05341___      1 ATGAATAAGCTTTATCGCTCAGAAAAAAATAAGAAA-ATCGCCGGTGTTA     49
                     |||||.|.|||.|.|||.||.||||.|.| .||||| ||.|||||.||..
BL03398___yvl      1 ATGAAAAGGCTATTTCGATCCGAAACAGA-CAGAAAGATTGCCGGGGTCG     49

BSNT_05341___     50 TCGGAGGTCTCGCGGAATATTTCAATTGGGACGCATCACTCCTCAGAGTC     99
                     ||||||||||.||.||||||||.|||..|||.||.|||.|.||.|||.||
BL03398___yvl     50 TCGGAGGTCTTGCTGAATATTTAAATATGGATGCGTCATTGCTGAGAATC     99

BSNT_05341___    100 ATAACTGTCATCTTAGCCATTAT----------GACAAGTGTCTTGCCGG    139
                     ||.||.||  |||     |||||          |||..|.|   |.||.|
BL03398___yvl    100 ATTACGGT--TCT-----ATTATTTATATTTTCGACCGGAG---TTCCCG    139

BSNT_05341___    140 TTTTGCTCATTTATATCATTTGGATTTTTATCGTCCCGTCAGAAAGGGAT    189
                     |..||||.||||||||..|.|||.|.||..|.||.|||...|||.|.||.
BL03398___yvl    140 TCCTGCTGATTTATATTGTCTGGGTATTCCTTGTGCCGAATGAAGGAGAC    189

BSNT_05341___    190 ATGAA---ATGA    198
                     .|.||   ||||
BL03398___yvl    190 GTCAACAGATGA    201


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