Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02261 and BL03528
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02261___ykoY.1.5803.seq
# -bsequence dna-align/BL03528___ykoY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02261___ykoY-BL03528___ykoY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02261___ykoY-BL03528___ykoY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02261___ykoY
# 2: BL03528___ykoY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 986
# Identity: 590/986 (59.8%)
# Similarity: 590/986 (59.8%)
# Gaps: 229/986 (23.2%)
# Score: 2105.5
#
#
#=======================================
BSNT_02261___ 1 ATGTATTCCGGAAACAAAGTCGTCATTTCATGGATTGTATCCATCGGCTT 50
BL03528___yko 0 -------------------------------------------------- 0
BSNT_02261___ 51 TGTTGGCATGCCTGAATTCATGTCTAGCAAGACCTTTGCCTTATGTCGGC 100
BL03528___yko 0 -------------------------------------------------- 0
BSNT_02261___ 101 AAAGGTCTTTTTTGCATGGTCCGGCCGGCATAAGATCGGATGAAGAGAAA 150
BL03528___yko 0 -------------------------------------------------- 0
BSNT_02261___ 151 GAAAACAACTTTTTTGGGAGGGTATCATTTATGGATGCAGCATTATTATT 200
||||||||||||||||||.|
BL03528___yko 1 ------------------------------ATGGATGCAGCATTATTACT 20
BSNT_02261___ 201 AGAGTATGGTTGGGTTCTTCTCGTCTTGATCGGGCTGGAAGGGATTTTAG 250
.||.||||||||||||||||||.||.|..|||||||||||||.|||||.|
BL03528___yko 21 TGAATATGGTTGGGTTCTTCTCATCCTAGTCGGGCTGGAAGGCATTTTGG 70
BSNT_02261___ 251 CCGCCGATAACGCGCTGGTTATGGCGGTAATGGTAAAACATTTGCCGGAG 300
||||.||.||.||.||.||.||||||||.|||||.|||||.|||||.||.
BL03528___yko 71 CCGCGGACAATGCCCTCGTCATGGCGGTCATGGTTAAACACTTGCCTGAA 120
BSNT_02261___ 301 GAAAAAAGAAAAAAAGCGTTATTTTATGGATTGGCAGGGGCTTTTGTTCT 350
.||.|.||||||||||||.|.||.||.||.|||||.||.||.|||||..|
BL03528___yko 121 AAAGACAGAAAAAAAGCGCTCTTCTACGGGTTGGCCGGCGCGTTTGTGAT 170
BSNT_02261___ 351 GCGATTTGGCTCTTTATTCGCCATTTCATTTTTGGTCAACGTATGGCAGG 400
|.|.||.|||.||||.||.||.||.||.||..|.|||||.||.||||||.
BL03528___yko 171 GAGGTTCGGCGCTTTGTTTGCGATCTCTTTCCTTGTCAATGTCTGGCAGT 220
BSNT_02261___ 401 TTCAAGCGATTGGCGCGATCTATTTGCTGTATATCTCAGCAAGCCA-CTT 449
|.||.|||||.|||||..|.|||.||||.||.||.||.| .||| |.|
BL03528___yko 221 TGCAGGCGATCGGCGCCGTTTATCTGCTTTACATTTCCG---TCCATCAT 267
BSNT_02261___ 450 A--TTGAAAAGATATGTATTTAAGAAAGAAGACACACATAAAGAGACGAA 497
| |||||||...|.||.||.||.||.||.||.|.|...||.||||||||
BL03528___yko 268 ATTTTGAAAACCCACGTTTTCAAAAAGGACGAAAAAGTGAAGGAGACGAA 317
BSNT_02261___ 498 GCAAAGCGGTTTTTGGCCGACTGTTTTAAAAGTTGAACTGGCAGATATCG 547
|||||||||||||||||||||.|||.|.|||||||||||||||||.||||
BL03528___yko 318 GCAAAGCGGTTTTTGGCCGACGGTTATCAAAGTTGAACTGGCAGACATCG 367
BSNT_02261___ 548 CGTTTGCTGTTGATTCCATCTTAGCAGCAGTAGCGCTGGCGGTTACACTT 597
|.|||||.||.||.||.||.|||||.||.||.||||||||.||.||||||
BL03528___yko 368 CTTTTGCCGTCGACTCGATTTTAGCTGCGGTTGCGCTGGCTGTCACACTT 417
BSNT_02261___ 598 CCTGGGACATCACTCCCGAAGATCGGCGGACTTGACGGAGGACAATTTCT 647
||.|.||||...||.|||.|.||||||||.||||||||.|||||.||..|
BL03528___yko 418 CCGGCGACAAACCTGCCGCAAATCGGCGGGCTTGACGGCGGACAGTTCAT 467
BSNT_02261___ 648 CGTCATTTTGGCCGGCGGTATCATCGGACTGGTGATCATGCGGTTTGCGG 697
.||.|||||.||||||||.|||||||||.||.|.||.|||||.|||||.|
BL03528___yko 468 GGTAATTTTAGCCGGCGGGATCATCGGATTGATTATTATGCGCTTTGCTG 517
BSNT_02261___ 698 C--TTCCATGTTTGTGAAGTTATTAAAGGAACGTCCAAGCCTAGAAACAG 745
| .||.| ||||||||.||.||||||.|||||||.|||||.|||||.|
BL03528___yko 518 CAAGTCAA--TTTGTGAACTTGTTAAAGAAACGTCCGAGCCTGGAAACGG 565
BSNT_02261___ 746 CAGCCTTTGTGATTGTCGGCTGGGTCGGAGTGAAGCTTGCTTTATATACG 795
|.||.|||.||||||||||||||||.||.|||||.||..|..|.||||||
BL03528___yko 566 CTGCTTTTCTGATTGTCGGCTGGGTTGGTGTGAAACTGACGCTCTATACG 615
BSNT_02261___ 796 CTTGCCCA-TCGCGA---CATAGCGGTTGTTTCTGAGCACTTTATTCATT 841
||.||.|| .|||.| .||| |.||.|||||.||.||||||||||
BL03528___yko 616 CTCGCACACCCGCAAATCAATA----TCGTCTCTGAACATTTTATTCATT 661
BSNT_02261___ 842 CTGGAACATGGAAGCTGATATTCTGG--GGTGTCTTAGCAGCAATCGCGG 889
|.||.||.||||||.|.||.|||||| |||| ||.|.| ||.||.|||.
BL03528___yko 662 CAGGTACTTGGAAGTTCATCTTCTGGGCGGTG-CTGATC-GCCATTGCGC 709
BSNT_02261___ 890 TTTGCGGCTGGTTTATGTCAGGTGGGAAAAAACAGCCGGAGGGCGCACAA 939
|..|.||.|||||||||.||..|..|||.||||| ||
BL03528___yko 710 TCGGGGGATGGTTTATGACAAATCCGAACAAACA---------CG----- 745
BSNT_02261___ 940 AACGAACAAAGAAACAGCACCCGTGAACGGGCGTAA 975
.|||.|||| |.|| ||| ||.||||
BL03528___yko 746 --AGAATAAAG---CTGC-----TGA---GGAGTAA 768
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