Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00507 and BL03701

See Amino acid alignment / Visit BSNT_00507 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_00507___ycdI.1.5803.seq
#    -bsequence dna-align/BL03701.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00507___ycdI-BL03701.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00507___ycdI-BL03701.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00507___ycdI
# 2: BL03701
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 911
# Identity:     430/911 (47.2%)
# Similarity:   430/911 (47.2%)
# Gaps:         349/911 (38.3%)
# Score: 850.5
# 
#
#=======================================

BSNT_00507___      1 ATGAATC-TCGTCTCATTGAAA-GA------TATCGTTTTCGGCTATTCC     42
                     .||||.| .|.|.|.||||||| ||      ||||.|.|||  ||||...
BL03701            1 TTGAAACAACCTATTATTGAAATGAAGCATGTATCATATTC--CTATGAT     48

BSNT_00507___     43 CATACGC-CTGTTTTAGATA-AAG-TATCACTT--GATATTGA--AAGCG     85
                     ||| ||| .|||    |||| ||| |||.|.||  .|.|||||  ||| |
BL03701           49 CAT-CGCAATGT----GATAGAAGATATAAATTTGCAAATTGAAGAAG-G     92

BSNT_00507___     86 GTGAGTTCGTCGGCATCACTGGGCCAAACGGCGCCTCTAAATCGAC---G    132
                     |....||| |||||.|...|||.||||||||..|....||..||||   |
BL03701           93 GACTTTTC-TCGGCCTGGTTGGTCCAAACGGATCGGGAAAGACGACATTG    141

BSNT_00507___    133 CTCATAAAGGTAATGC----TGGGCATGCTGAAACCGTGGGAAGGC----    174
                     ||       |.|||||    ||||..||.|.||.|||..|..||||    
BL03701          142 CT-------GAAATGCATTTTGGGGCTGATTAAGCCGCAGACAGGCGAAC    184

BSNT_00507___    175 ----ACAG--TGACG-----ATCAGTAA----AAGGAATACAGAAGGGAA    209
                         ||.|  ||.||     .||||.||    |||||.|..|    |.||
BL03701          185 TTAAACTGTTTGGCGTTCCTCTCAGAAAATTTAAGGACTGGA----GCAA    230

BSNT_00507___    210 ACGCCTGACCATAGGGTACGTCCCGC----AGCAAATTTCTTCA--TTTA    253
                     |         ||.||.|.|||..|.|    ||||||      ||  ||||
BL03701          231 A---------ATCGGCTTCGTATCCCAAAAAGCAAA------CAGCTTTA    265

BSNT_00507___    254 ATGCCGGCTTTCC-------------GA-------GCA--CGGT------    275
                     |..||||.|||||             ||       |||  ||||      
BL03701          266 ACACCGGTTTTCCCGCTTCTGTTTATGAAGTGGTGGCAAGCGGTTTAACC    315

BSNT_00507___    276 -----GCTGGAGCTTGTTCAGTC---------AGGCCGCTATACAAAAGG    311
                          |||.| ||||.|||||.|         |.||||.||..||.||||
BL03701          316 GCAAAGCTCG-GCTTATTCAGACGCATGTCCAAAGCCGATAAGCAGAAGG    364

BSNT_00507___    312 GAAATGGTTTAAACGTTTAAATGAAGAAGAT-----CATCTTGAAGTAGA    356
                         |||.|.||.||.|       .||||.|     ||||   |.||   
BL03701          365 ----TGGATGAAGCGAT-------CGAAGCTGTCGGCATC---ACGT---    397

BSNT_00507___    357 AAAAGCACTGAAAATGGTGGAAATGTGGGAGCTCCGTCATCGTAAAATCG    406
                          |.||||||                      |.||  |.||.||||
BL03701          398 -----CCCTGAAA----------------------GACA--GAAACATCG    418

BSNT_00507___    407 GTGATTTATCAGGCGGACAGAAACAGAAAATCTGT-ATCGCCAGAATGCT    455
                     |.||..|.||.||.||||||.|.||||.|| ||.| |||||.|||..|||
BL03701          419 GCGAGCTTTCGGGAGGACAGCAGCAGAGAA-CTTTCATCGCGAGAGCGCT    467

BSNT_00507___    456 CGCCAGCAACCCGGATCTGCTGATGCTGGACGAACCGACGACAGCTGTT-    504
                     .|..|||.|.|||.|.|||||.||.||.|||||.||||||      ||| 
BL03701          468 GGTGAGCGAACCGAAGCTGCTCATTCTTGACGAGCCGACG------GTTG    511

BSNT_00507___    505 GATTACGACAGCAGAA--------AAGGATTTTAC-----------GAAT    535
                     ||.| ||  |.||.||        ||||.||||||           |||.
BL03701          512 GAGT-CG--ATCAAAAAACAGTTGAAGGGTTTTACAAGCTGCTGGAGAAA    558

BSNT_00507___    536 TTATGCATCACCTTGTGAAAAA----------TCA-------CAACC---    565
                     |  ||.|||     ||||||||          |||       ||.||   
BL03701          559 T--TGAATC-----GTGAAAAAGGCATTACGCTCATTCTTGTCACCCATG    601

BSNT_00507___    566 ------GCACAGTTGT--GAT--GGTTACTCACG--------AACAAAAC    597
                           ||||.||| |  |||  .||.||.||||        |..||.| 
BL03701          602 ATGTCGGCACGGTT-TCCGATAAAGTCACACACGTTGCCTGCATGAATA-    649

BSNT_00507___    598 GAAGTACAGCA-----ATTTTTAGATAAAGTGATTCG--ATTAGAG-AGA    639
                            ||||     |||||.|            ||  |.||.|| |||
BL03701          650 -------AGCATCTTCATTTTCA------------CGGCAATACAGAAGA    680

BSNT_00507___    640 G---GAGAAAAAGGCGGATGGAAATGTTTGACTTG---GAATT-------    676
                     |   |||...|.|.|.|||..|       ||||||   .||||       
BL03701          681 GTTTGAGTCCATGACAGATCAA-------GACTTGTCTCAATTTTACGGG    723

BSNT_00507___    677 CATGCGACGAGCTTTTCTAG------------------------------    696
                     |||       |.|.|||.||                              
BL03701          724 CAT-------GATGTTCAAGCCATCAGCCACAATCACCATCATCATGGAG    766

BSNT_00507___    696 -----------    696
                                
BL03701          767 GACACGAATAA    777


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