Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05906 and BL03840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05906___licR.1.5803.seq
# -bsequence dna-align/BL03840___licR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05906___licR-BL03840___licR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05906___licR-BL03840___licR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05906___licR
# 2: BL03840___licR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2122
# Identity: 1264/2122 (59.6%)
# Similarity: 1264/2122 (59.6%)
# Gaps: 407/2122 (19.2%)
# Score: 3390.0
#
#
#=======================================
BSNT_05906___ 1 ---------------------------------------ATGGCGGCTGA 11
||.|.|||.||
BL03840___lic 1 ATGCTCAATGCTCGGCTTAAGCTTATCCTCGGCGAATTGATAGGGGCAGA 50
BSNT_05906___ 12 AGCCCCGGTGACAAGTTCGTTTTTTGCGGCGCAAT----TAAACGTAACG 57
|.|.||..|.||.||..|.|.|||.|| |||| ||||.||.||.
BL03840___lic 51 ATCACCATTAACCAGCGCATATTTGGC----CAATGAGCTAAATGTGACC 96
BSNT_05906___ 58 ATGCGGA----CAGCCCGCAAT--GATATAAAGGAA-------------- 87
...|||| ||| || |||.|.||.|||
BL03840___lic 97 TCTCGGACGATCAG------ATCAGATGTGAAAGAATTAGACCGGCTTCT 140
BSNT_05906___ 88 CTTCAAGGTGTGCTAAGCGGCCACGGTGCCTTTGTACAATCGGTAAGAGG 137
||.||| ||.||| ||.|||| ||.||||||.|.||.||
BL03840___lic 141 CTCCAA--------AAACGG---CGCTGCC---GTCCAATCGATCAGGGG 176
BSNT_05906___ 138 CTCCGGCTACAAGCTCCGCATTGATGACGAGCAAGTAT------------ 175
..|.|||||...||||..||| ||||.||
BL03840___lic 177 TGCAGGCTATCGGCTCTCCAT----------CAAGAATGACCGCCTCTTT 216
BSNT_05906___ 176 --TCAGAACACTGCTGCAAGATGTATTTCAGCAAAAAAAGGGC------C 217
.||| ||.|||||..|...||||||.| |||.|| |
BL03840___lic 217 CGCCAG----CTTCTGCAGCACACATTTCATC-----AAGAGCTTTCTAC 257
BSNT_05906___ 218 TGCCGGTATTGCCGGAGGAGAGAATGGCCTATCTTA-TGAAACGTCTGCT 266
| ||.||.||.||..|.|||.|.||...|||| ||| |.|||.|.||.||
BL03840___lic 258 T-CCCGTTTTTCCAAATGAGCGTATTCTCTAT-TTATTAAAAAGGCTTCT 305
BSNT_05906___ 267 GCTGGCGGACCATTATCTCAAGCTCGATGAACTT-----GCTGAAGAACT 311
..|..|.||..|.|||.||||.||.||.|| || ||||| .
BL03840___lic 306 CTTAACTGAGGAGTATGTCAAACTTGAAGA--TTTAGCCGCTGA-----G 348
BSNT_05906___ 312 ATTTATCTCA--AAATCTACACTCCAAACGGATTTAAAGGAAGTAAAGAA 359
||.|||.||| |||||.||..||||||..|||.|.|..||.||.|||||
BL03840___lic 349 ATGTATATCAGCAAATCGACGGTCCAAAACGATATGAGAGATGTGAAGAA 398
BSNT_05906___ 360 ACGTCTGCTGCCTTACCGCATCGTCATGGA-AACACGTCCGAATTACGGC 408
|.|.||....||||||..|||.|...||.| |.||.| ||||||||||||
BL03840___lic 399 AAGGCTTAAACCTTACGACATTGAGCTGAAGATCAAG-CCGAATTACGGC 447
BSNT_05906___ 409 TTCAAGCTGCGCGGGGACGAGGTGCAGATGAGGTACTGCATGGCGGAGTA 458
||.||||||...||.||.|||.||.||.||.|.|..|||||.||.|||.|
BL03840___lic 448 TTTAAGCTGAAGGGAGATGAGATGAAGCTGCGATCGTGCATCGCAGAGCA 497
BSNT_05906___ 459 CATTGTTGATGAAA--GAGAAACGGAGATAGATGTTTTAAATGAAAAGGC 506
|.||.|| ..||| |.||||||||.||.|||.|| |||||.|..|
BL03840___lic 498 CCTTTTT--CCAAAGCGGGAAACGGATATTGATATT----ATGAACACCC 541
BSNT_05906___ 507 TGAT----ATTTTGCCAAAAGAAGAAATTGAGATCATCCGTTCCGCCATC 552
.||| |||.|.|||||||||||..|||..||.||||||....|.||.
BL03840___lic 542 GGATATCCATTCTCCCAAAAGAAGAGCTTGCTATGATCCGTCAAACGATT 591
BSNT_05906___ 553 TTGAAAAAAAT----GAAAAACGACCGCATCCCTCTGTCCAACATGGGAC 598
||..||||||| ||| ||.|..||..||||.||..|.||.||||
BL03840___lic 592 TTAGAAAAAATAAGCGAA----GATCAAATTTCTCTTTCAGATATCGGAC 637
BSNT_05906___ 599 TGAATAACCTCATTATCCATATTGCTATCGCCTGTAAACGGATTAGAA-C 647
|.||.||.||..|.|||||..|.||.||.||.||.|||||.||..||| |
BL03840___lic 638 TAAACAATCTTCTCATCCACGTCGCCATTGCATGCAAACGCATCCGAAGC 687
BSNT_05906___ 648 GGAAAACTATGTATCTCTT--TTCCCGAAAGATATGGATCATATCCTGCA 695
||.|||| ||||.|||||| |||| ||||||.|..|..|.||..||.|
BL03840___lic 688 GGCAAAC-ATGTTTCTCTTTATTCC--AAAGATGTAAAGGAGATTATGAA 734
BSNT_05906___ 696 TCAAAAGGAGTACCAGGCTGCAGAAGCCATCGTAAAAGAG---------- 735
|||.||.||.|| ||.||..|| |||
BL03840___lic 735 TCATAAAGAATA------TGAAGTGGC----------GAGGGCGATTGTC 768
BSNT_05906___ 736 ------CTGGAATCAAAGCTTTCCGTTACATTTCC-GAAAGAAGAGACGG 778
||.|||..||||||...|||..|.||||| |||| ||||.||||
BL03840___lic 769 CGCACTCTTGAACAAAAGCTGCACGTGGCGTTTCCAGAAA-AAGAAACGG 817
BSNT_05906___ 779 CCTACATCACCATGCATCTCCTTGGCAC-AAAACGA-----ATGAC--AC 820
||||||||.||||.|||.|.||||||.| ||||.|| |||.| .|
BL03840___lic 818 CCTACATCGCCATCCATTTGCTTGGCGCGAAAAGGACGGTTATGGCCGCC 867
BSNT_05906___ 821 AATCACAATGCGGAGAGGACA--------CATTTTCAATAGAAGAGGAAA 862
|.||.|| ||||.| || |||..|..|| |||||.||.|
BL03840___lic 868 ATTCGCA--GCGGTG----CAATCGAAAGCATGATGGAT-GAAGAAGAGA 910
BSNT_05906___ 863 CCGATCAGCTGA--CACTTGCCATGATCAAAGCTGTTGATCGTGAACTGA 910
|.||.|.||||| ||.||| ||.||.|||.|..|.||||...||.|.|
BL03840___lic 911 CAGACCGGCTGACGCAATTG--ATCATGAAAACCATCGATCAAAAATTCA 958
BSNT_05906___ 911 AGCTTGGCATCCTGCATGACAAAGAGCTGAAAATCGG-CTTGGCCCTGCA 959
..||.|||||...|.||||||||||..|.|||||||| ||.|| |||.||
BL03840___lic 959 CCCTCGGCATTGGGGATGACAAAGAATTAAAAATCGGTCTCGG-CCTTCA 1007
BSNT_05906___ 960 TATGAAGCCGGC----GATCAGCCGCAACCGATACGGCATGAATCTTCGA 1005
..|.||.||||| .||| ||.||| ||||||||||||||.|..||
BL03840___lic 1008 CCTAAAACCGGCTTTGAATC-GCTGCA---GATACGGCATGAATATCAGA 1053
BSNT_05906___ 1006 AATCCGATGCTGGCAGCGATCAAGGAACATTATCCACTCGCTTTTGAAGC 1055
|||||.|||||||..||.||.||||...|||||||.|||||.||||||||
BL03840___lic 1054 AATCCAATGCTGGATGCAATTAAGGCCAATTATCCGCTCGCATTTGAAGC 1103
BSNT_05906___ 1056 CGGGA-TCATTGCCG--GAATCGTGAT--AAAGGAACAAACGGGTATTGA 1100
.||.| ||| .|||| ||| ||.|| |||| |.|.|||||..||||
BL03840___lic 1104 GGGTATTCA-AGCCGGTGAA--GTCATCAAAAG--AGAGACGGGATTTGA 1148
BSNT_05906___ 1101 GATTCATGAAAACGAAATTGGATATTTGGCTCTCCACTTTGGCGCCGCGA 1150
.|||||.||||.|||..|.||.||..|.||..|.||..|.|||||.||.|
BL03840___lic 1149 CATTCAGGAAAGCGAGGTCGGCTACCTCGCGTTGCATATAGGCGCAGCCA 1198
BSNT_05906___ 1151 TTGAACGAAAAAA----AACAGAAAGCCCGCCGAAACGCTGTATCATTGT 1196
|.|||.|||.||| ||||| |||| .|.|||||||||||.|||||
BL03840___lic 1199 TGGAAAGAAGAAACATGAACAG---GCCC-TCAAAACGCTGTATGATTGT 1244
BSNT_05906___ 1197 ATGCGCATCGGGAGCCGGAAGCGCCCAGCTTCTGCGCGAAAAACTGCGTT 1246
.||.||.||.||.||||||||||||..|||.||.|..||.|.||||||..
BL03840___lic 1245 CTGTGCTTCAGGGGCCGGAAGCGCCATGCTGCTTCAGGACAGACTGCGGG 1294
BSNT_05906___ 1247 C-CCATTTCGG--CAAGCGGCTCGATATTCTTGGAACGGCTGAGTATTAT 1293
| .|| ||||| ||| .|||.||.||.||||||||||.|||.||.||.
BL03840___lic 1295 CAACA-TTCGGTTCAA--AGCTTGAGATCCTTGGAACGGTTGATTACTAC 1341
BSNT_05906___ 1294 AGTCTTGATCAAATGTC-CTACGAAT-CAATTGATTTTGTCATCAGTACC 1341
|..||..|||||||||| ||.| || ||.|.||.|||||.|||||.||.
BL03840___lic 1342 AAGCTGAATCAAATGTCGCTCC--ATGCACTCGACTTTGTTATCAGCACA 1389
BSNT_05906___ 1342 AT-------TCCGATTAAAAAAGAGCTCCCTGTACCAGT-ACTGAAGGTT 1383
|| |||||| ||.||.||..|.||.|| |.|.|| ||.
BL03840___lic 1390 ATACCGCTGTCCGAT-------GATCTTCCCATTCCGGTGATTCAA-GTA 1431
BSNT_05906___ 1384 AACACCATCTT---AGGCGGAACTGACTTTACAAAAATAGAATCTATTCT 1430
|||||.||..| |||.||| ||.||.||.||||||||| .
BL03840___lic 1432 AACACAATACTGGGAGGGGGA---GATTTAACGAAAATAGAA-------C 1471
BSNT_05906___ 1431 GAGTGAT----GAAAAGGAAAAAGCC--AATCGCT---ACCTA----AAA 1467
.||||.| |||.|.|| | ||||||| ||.|| |.|
BL03840___lic 1472 AAGTGCTTGCCGAAGATGA------CGGAATCGCTTCGACTTATACGAGA 1515
BSNT_05906___ 1468 AAAGAACTCGTTTTTTTTCAGGAGGATCTGCGCTCAAAAGAAGAAGTGAT 1517
|||||.||.||.|||||.|.|||...||||...||||.|||.||.||..|
BL03840___lic 1516 AAAGAGCTTGTCTTTTTGCGGGAAAGTCTGTCTTCAAGAGAGGATGTCCT 1565
BSNT_05906___ 1518 TCAATTTTTAGGGCAGAAAGCGGTCG-AATGCGGCTTTGCCAGA------ 1560
||..|||.| |.||.||||...|.|| |||..||..||| ||||
BL03840___lic 1566 TCGCTTTCT-GTGCGGAAAAGTGACGCAATCAGGGCTTG-CAGACGCGGG 1613
BSNT_05906___ 1561 ----GAAGAAATCATAGATTCCATTTTTGAAAGAGAAGACATGTCGCCAA 1606
|| ||..||..|.||||||.|.||.|.|.|..||||.|
BL03840___lic 1614 GCTTGA---------AGCCTCGGTCTTTGAACGGGAGGCCGTTGCGCCCA 1654
BSNT_05906___ 1607 CGTGTTTTGGCAATCTTGTTGCCATCCCGCACCCGCTTGTTCCGCAGACG 1656
|.||.||.||||||||.|||||.||.|||||.|||.| .|.||.
BL03840___lic 1655 CTTGCTTCGGCAATCTGGTTGCGATTCCGCATCCGAT-------GACACC 1697
BSNT_05906___ 1657 AAAA-------CAACGTTTTGGGCTGTTTGTACGCTCAAAAAACCGATCG 1699
|||| ||||.||||||||.|||||.|||||..||||||||||.|
BL03840___lic 1698 AAAAACCGCTTCAACTTTTTGGGCGGTTTGCACGCTGCAAAAACCGATAG 1747
BSNT_05906___ 1700 ATTGGGAGAGTCAGCGAGTTCAATTTGTCTGTTTGCTTTGTGTCGAAAAG 1749
..|||||||.|.||.|.||||||||.|||||..|.||||||||.||||||
BL03840___lic 1748 TCTGGGAGAATAAGAGGGTTCAATTCGTCTGCCTTCTTTGTGTAGAAAAG 1797
BSNT_05906___ 1750 GAGAACAAAGCTGACTTGCA-AAGCATGTATAAACTGCTTGGCAGCATTT 1798
||.||.|.|||..|.||||| .|| |||||.|||.|..|.|||.|..|||
BL03840___lic 1798 GACAATACAGCAAATTTGCAGGAG-ATGTACAAATTTTTGGGCCGTGTTT 1846
BSNT_05906___ 1799 TGGATGACCCGGCG-----GCGGTGAAC-CAGCTGGTCAAATGC----CG 1838
|.||||||..|||| .||| |||| | ||| |||||| ||
BL03840___lic 1847 TAGATGACAGGGCGATTGTCCGG-GAACTC--CTG---AAATGCAAAACG 1890
BSNT_05906___ 1839 TTCGTATCAAGAGCTTTCGGAT----GTGTTTGACCAAAAAATGCTG--- 1881
|.|| ..|||.|| || ||.||| ||||||.||.|
BL03840___lic 1891 TACG----GGGAGTTT----ATGTCCGTCTTT----AAAAAAAGCGGGCC 1928
BSNT_05906___ 1882 AGCTGA---------------- 1887
.|||.|
BL03840___lic 1929 GGCTCATCGATATGCCAAATGA 1950
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