Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05738 and BL03919

See Amino acid alignment / Visit BSNT_05738 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:50
# Commandline: needle
#    -asequence dna-align/BSNT_05738___ywhD.1.5803.seq
#    -bsequence dna-align/BL03919___ywhD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05738___ywhD-BL03919___ywhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05738___ywhD-BL03919___ywhD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05738___ywhD
# 2: BL03919___ywhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 523
# Identity:     422/523 (80.7%)
# Similarity:   422/523 (80.7%)
# Gaps:          11/523 ( 2.1%)
# Score: 1719.0
# 
#
#=======================================

BSNT_05738___      1 ATGG---AAGAAAAAAAGAAAAAATCAATCGGGTTTAATATTATCAAAAG     47
                     ||||   |||.|||||||||||||.|||||||.||.||.|||||.|||||
BL03919___ywh      1 ATGGAACAAGGAAAAAAGAAAAAAACAATCGGATTCAACATTATTAAAAG     50

BSNT_05738___     48 TGATCCGACAGACGGACACGGCGGTTTTGGCGTAGGGGCACTCAGCCTTG     97
                     .||||||||||||||||||||.||.|||||.|.|||.|||.|.|||||||
BL03919___ywh     51 CGATCCGACAGACGGACACGGGGGATTTGGAGCAGGCGCATTAAGCCTTG    100

BSNT_05738___     98 ATAACATTTCTCCCGT-ATTCGTTGATGTAGAAGAAAAAGAAGCGTTCGT    146
                     |.|||||.||.||.|| ||| ||.|||||.|||||.|||||||||||.||
BL03919___ywh    101 ACAACATCTCGCCTGTCATT-GTCGATGTTGAAGAGAAAGAAGCGTTTGT    149

BSNT_05738___    147 AGACATCGGCGCCATGCATGCCCGCAGCACCGTTGAAAAAGGAATTAAAT    196
                     .||.||||||||||||||.|||||||||||.||||||||||||||.||||
BL03919___ywh    150 GGATATCGGCGCCATGCACGCCCGCAGCACGGTTGAAAAAGGAATCAAAT    199

BSNT_05738___    197 TTCTCCCGAATAAAGAAGAAGTGCCGAACGGAAAACCATACTGGCTTGTG    246
                     ||.|.|||||.||||||||.|||||||||||||||||.||||||||||||
BL03919___ywh    200 TTTTGCCGAACAAAGAAGAGGTGCCGAACGGAAAACCTTACTGGCTTGTG    249

BSNT_05738___    247 TGGGTAACGATTGACAGAAAAGAAGAGGGGCCTTATTACGCTGGTGTGAC    296
                     |||||.|||||.|||.|.|..|||||.||.||||||||.||.||||||||
BL03919___ywh    250 TGGGTTACGATCGACCGCAGGGAAGAAGGCCCTTATTATGCGGGTGTGAC    299

BSNT_05738___    297 AGCCTGTGAAATGACGGTCGACAGAAGCATCAGAAGAGGCTACAAGTCGC    346
                     .||.||.||||||||||||||||||||||||.|..|.||||||||.||||
BL03919___ywh    300 GGCATGCGAAATGACGGTCGACAGAAGCATCCGCCGCGGCTACAAATCGC    349

BSNT_05738___    347 TGCCTGAGCATGTGAATTTGATGGATAAATCCATGAAACGGAAAATCATC    396
                     |.||.|||||.||.|||||.||||||||.||.|||||.|||||.||.|||
BL03919___ywh    350 TTCCGGAGCACGTCAATTTAATGGATAAGTCGATGAAGCGGAAGATTATC    399

BSNT_05738___    397 GTTGATAAAATGGACGACAGCTCGAAGCGTGTACTAGGCGAATTTCTGAA    446
                     ||.||..|.|||||.||..|.||.|||||.||.||.|.|||.||||||||
BL03919___ywh    400 GTCGAGCATATGGATGAAGGTTCTAAGCGCGTTCTTGCCGATTTTCTGAA    449

BSNT_05738___    447 AAAGCATGATCAGGGCCTATGGGACCGTTCCTCAGATGAGTTAAAAACGA    496
                     |||.||||||||.||.||.|||||||||||.|||||.|||.|.||||.|.
BL03919___ywh    450 AAACCATGATCAAGGGCTTTGGGACCGTTCATCAGACGAGCTGAAAAAGG    499

BSNT_05738___    497 GCCTGCTTCCGGAAAACAATTAA    519
                     |.|||||.|.|.||.|.      
BL03919___ywh    500 GACTGCTCCAGCAATAG------    516


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.