Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05736 and BL03962
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:50
# Commandline: needle
# -asequence dna-align/BSNT_05736___ywhE.1.5803.seq
# -bsequence dna-align/BL03962___ywhE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05736___ywhE-BL03962___ywhE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05736___ywhE-BL03962___ywhE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05736___ywhE
# 2: BL03962___ywhE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2193
# Identity: 1448/2193 (66.0%)
# Similarity: 1448/2193 (66.0%)
# Gaps: 234/2193 (10.7%)
# Score: 4416.0
#
#
#=======================================
BSNT_05736___ 1 GTGGATGCAATGACAAATAAACGGCTGAGACTGACGCTGAAAACCGTTCG 50
.||||...||||||..|.||.|||.|..|..|.||..|.||.||..|.||
BL03962___ywh 1 ATGGACATAATGACGGACAAGCGGGTCCGTTTAACCATCAAGACGATACG 50
BSNT_05736___ 51 CGCCTTTATCTTTTTAGGGGCTTT--TGCGG-----CCTTGGCGGCAGCT 93
|||.|||.|.||..|.||.||.|| |||.| |||| .|.
BL03962___ywh 51 CGCATTTTTGTTCATGGGAGCATTGATGCTGATCTTCCTT-------TCA 93
BSNT_05736___ 94 GCCGTGTTTATGACTGTCATTTTGATAGCCAAATACCAGGGCGCTCCCTC 143
..|||..|.|||||.||..|.|||...|||||||..||.||||||||.||
BL03962___ywh 94 ATCGTTGTCATGACGGTGGTCTTGGCGGCCAAATGGCAAGGCGCTCCTTC 143
BSNT_05736___ 144 GGTGCAAGTGCCGCAATCCACGATTTTGTATGCGAGTGACG---GCTCAA 190
|.|.||.||||||...||.||..|..|||| ||||| ||..||
BL03962___ywh 144 GATTCAGGTGCCGAGGTCTACCGTGCTGTA------TGACGGAAGCGGAA 187
BSNT_05736___ 191 AGC---TCGGGGAAACGAACTACGGCGAAAAGCGCTATTGGGTCCCCTTA 237
||| |.|||||||||.|.|||||..|||||||.||.|||||..|..|.
BL03962___ywh 188 AGCAAATGGGGGAAACGCATTACGGGCAAAAGCGGTACTGGGTTTCGCTG 237
BSNT_05736___ 238 AAGGACATGAATCCGACG-----ATCGTAAAAGCGACAGTGGCGATTGAA 282
|||.||||.||||| || |||| |.||.||..|.||..|||||
BL03962___ywh 238 AAGAACATCAATCC--CGCAGTCATCG---ATGCCACGCTTGCCGTTGAA 282
BSNT_05736___ 283 GACCAGAA-TTTCTACGATCATCACGGCTTTGATTATAAACGCATGGCCG 331
||||.||| |||.|.|| .||.|||||||||||.||||...|.||||
BL03962___ywh 283 GACCGGAACTTTTTCCG-GCACCACGGCTTTGACTATATGAGGATGG--- 328
BSNT_05736___ 332 GCGCGGCGC-----TTGCTGACCTGAAAGC-ATTTGCCAAGGTTCAGGGT 375
||||||| ||||.||..|.||.|| ||.| ||||.||||||||.
BL03962___ywh 329 --GCGGCGCCCTCATTGCCGATTTAAAGGCGATGT-CCAAAGTTCAGGGA 375
BSNT_05736___ 376 GCAAGCACCATCACCCAGCAATATGCCAGAAATTTATACCTTGAACACGA 425
||.|||||||||||||||||||||||.|||||..|.|||||.|..|||||
BL03962___ywh 376 GCCAGCACCATCACCCAGCAATATGCGAGAAACCTCTACCTCGGCCACGA 425
BSNT_05736___ 426 CAAAACGTGGAAACGGAAATGGAATGAGGCGTTCTACACGATCCGTCTGG 475
.|||||.||||||.|.||.||||||||.||.||.||.|||||..|.||.|
BL03962___ywh 426 TAAAACATGGAAAAGAAAGTGGAATGAAGCTTTTTATACGATAAGGCTTG 475
BSNT_05736___ 476 AACAAAACTATTCTAAGGACGAGATATTAGAAGGCTATTTAAATACGATT 525
||||||||||..|.|||.|.||.||.||.|||||||||||||||||||||
BL03962___ywh 476 AACAAAACTACACAAAGAAAGATATTTTGGAAGGCTATTTAAATACGATT 525
BSNT_05736___ 526 TACTACGGACACGGCGCCTACGGCATTGAAGCAGCTTCCCGCCTTTATTT 575
||.|||||.||.||.||.|||||.||.|||||.||||||||.||.|||||
BL03962___ywh 526 TATTACGGGCATGGAGCATACGGAATCGAAGCGGCTTCCCGGCTGTATTT 575
BSNT_05736___ 576 CGGCAAGCATGCCAAAAACCTGACGGAT---GCGGAGGCGGC---GCTTT 619
.|||||||..||||||.|..|.| || ||||||||.|| ||||
BL03962___ywh 576 TGGCAAGCGGGCCAAAGATATCA---ATACGGCGGAGGCTGCAATGCTT- 621
BSNT_05736___ 620 TGGCAGGAATCCCGAAAGGCCCTTCCGGCTATTCACCGTATGTCAATGAG 669
||.||.||.||.||.||.|||||.|..|||||.||.|.|||||||||.
BL03962___ywh 622 --GCCGGCATTCCAAAGGGTCCTTCAGTTTATTCGCCCTTTGTCAATGAA 669
BSNT_05736___ 670 ACGAAAGCCAAGGAGCGCCAGAAAACGATTGTGCGGATGATGGAAAAGCA 719
|..|||||.||.||.||||||.|||.|||..||...||||||||.||.||
BL03962___ywh 670 AAAAAAGCGAAAGAACGCCAGGAAATGATCCTGACAATGATGGAGAAACA 719
BSNT_05736___ 720 ACAGATGATCAGCCAAAAGAAAGCGGATGAATTGATCAAGGAACCTCTTT 769
|.|.|.|.|.|...|||.|.|.||||..|.|.||| ||..|| |.
BL03962___ywh 720 AAACAAGCTGACGGAAATGCAGGCGGCAGCACTGA--AAAAAA-----TG 762
BSNT_05736___ 770 CCTATCAGCCTTTGAATAAAC-----AAGTTTCCAA------GAGAAA-- 806
||..||.| ||||||| |||| ||| ||| ||.|||
BL03962___ywh 763 CCGCTCCG-CTTTGAA-AAACAGGATAAG----CAAACAACCGAAAAAAC 806
BSNT_05736___ 807 GGCTCCTTATTTCTACGACAATGCGATGAGAGAGCTGGAGAAAAA----- 851
.|||||.||.||.||.|||.| |||||...||.||
BL03962___ywh 807 CGCTCCGTACTTTTATGACGA-----------AGCTGTTAAAGAAATTTC 845
BSNT_05736___ 852 ------GCTCGGCATGACACGGGAGCAAATTGAAACGAGCGGGTTAAACG 895
|||..|..||||.|.|||||||...|||||..||||.|..||||
BL03962___ywh 846 GCGATTGCTGCGTTTGACGCCGGAGCAAGCGGAAACAGGCGGCTACAACG 895
BSNT_05736___ 896 TCTATACAACGGTAGATAAACGGATGCAGCG---------CATCGCCGAG 936
|.|..||.|| |.|.||| |.||| .||.||||||
BL03962___ywh 896 TATTCACCAC----GCTCAAC-----CCGCGTCTCCAAAAAATTGCCGAG 936
BSNT_05736___ 937 GAGACCATTACCGAA---ACGGTTAACGCGGGCTCTGACATTCAAGTCGG 983
||.||.|| |||| |||.|..|..||...||.||||||| ||.|||
BL03962___ywh 937 GATACGAT---CGAACACACGATAGATTCGTCATCCGACATTC-AGGCGG 982
BSNT_05736___ 984 G-TTTTCAGCCATTGATC--CCCG--CACCGGAAACGTTCTCGCCCTTGT 1028
| |||.|||| |||| |||| |..|||.|.|||||||||.|||||
BL03962___ywh 983 GATTTGCAGC----GATCAACCCGTCCGACGGCAGCGTTCTCGCGCTTGT 1028
BSNT_05736___ 1029 CGGCGGCAGGGATTATCAAAAAAGCCCGTTTGACCGGACG--ACACAGGC 1076
|||.||..|.||.||..||||||||||.|||.|||| || ||.|||||
BL03962___ywh 1029 CGGAGGACGCGACTACGAAAAAAGCCCTTTTAACCG--CGTAACGCAGGC 1076
BSNT_05736___ 1077 GAAGCGCCAGCCTGCTTCGACGATCAAGCCATTGCTGTACTATAAAGCGA 1126
.|.|||.|||||.|..||.||.||.|||||.||.||.||.|||...|||.
BL03962___ywh 1077 TATGCGGCAGCCCGGCTCCACCATGAAGCCTTTCCTTTATTATTCGGCGG 1126
BSNT_05736___ 1127 TTCAGAGTGGATTTACGCCAGTCACTTTGATGAAAAGCGAAGAAACCGAG 1176
||||.|..||.|||||.||.|.|||....||||..||||..|||| |||
BL03962___ywh 1127 TTCAAAACGGCTTTACACCGGCCACCCGAATGAGGAGCGCGGAAA-CGA- 1174
BSNT_05736___ 1177 TTTCAAATTGATGC-----AAAGGGAGAAACCTATTCTCCAAGCAACTAT 1221
.|.|||| || .||||.|| ..|.|||||.||.|||||||||
BL03962___ywh 1175 ----CATTTGA-GCTCGGGCAAGGCAG-CGCTTATTCCCCGAGCAACTAT 1218
BSNT_05736___ 1222 AACGGATACTACGCCAACAAGCCGATTACGCTTCTGCAGGCGCTGGCGCT 1271
.||||.||.||.||..||...|||||.||||||||||||||.|||||..|
BL03962___ywh 1219 CACGGCTATTATGCAGACGGTCCGATCACGCTTCTGCAGGCACTGGCTTT 1268
BSNT_05736___ 1272 TTCCGACAATATTTACGCTGTGAAAACGCATCTTTTTCTCGGCACGAACA 1321
.|||||.||.||||||||.||||||||.||.|||||.|||||||.|.|||
BL03962___ywh 1269 GTCCGATAACATTTACGCCGTGAAAACCCACCTTTTCCTCGGCATGGACA 1318
BSNT_05736___ 1322 AACTTGTAAAGACGGCAAAGGAATTCGGCAT-TACCGCCCATCTTCAAGC 1370
||||..|..|..|.||||||.|||||||||| .||.|||| .||.|||..
BL03962___ywh 1319 AACTGATTGATGCCGCAAAGCAATTCGGCATCAACAGCCC-GCTGCAAAA 1367
BSNT_05736___ 1371 ACTGCCGTCCCTGGCACTCGGCACCGAACCC--GTGCGTCCGATTGAGAT 1418
|.|||||||.||.||.|||||.|| |.||| |||...||||||||.||
BL03962___ywh 1368 AGTGCCGTCGCTTGCGCTCGGAAC--ATCCCCTGTGAAGCCGATTGAAAT 1415
BSNT_05736___ 1419 GGTCAACGCCTATGCCATGCTCGCAAATGGCGGAAAGAAAATCGAACCGA 1468
|||.||||..||.||||||.|.||.||.|||||.||.|||||||||||..
BL03962___ywh 1416 GGTGAACGGATACGCCATGTTTGCCAACGGCGGGAAAAAAATCGAACCTT 1465
BSNT_05736___ 1469 CTTTTATTTCAAGGGTAACGGA--CGCAGCCGGCCACGTGCTGTACGAAA 1516
|.||||||.|.|...|.||.|| ||.| |||..|.||.||.||.||||
BL03962___ywh 1466 CCTTTATTACGAAAATTACCGATCCGAA--CGGGAAGGTTCTTTATGAAA 1513
BSNT_05736___ 1517 ACCCGAATC--AGCATAAACAGGTGCTTGATGAAAAAGCCGCTTTTGTCA 1564
|.|||||.| ||| |||||..|.|||||...||||||.||||||.|||
BL03962___ywh 1514 AACCGAAGCGGAGC--AAACAAATCCTTGACCCAAAAGCGGCTTTTATCA 1561
BSNT_05736___ 1565 CAGCGAGTATGATGACAGGCATGTTTGATACCGATT---TAAATGGATAT 1611
|.||||..|||||||..||.|||||.|| |.|.| |.||.||.|||
BL03962___ywh 1562 CGGCGAACATGATGAGCGGGATGTTCGA---CAAATCACTCAACGGCTAT 1608
BSNT_05736___ 1612 ACGTCGGTTACGGGACGAACGATAGCCAACCGCCTGACAAGAACG-TATG 1660
||.||.|||||.||.||.|||||.||..|.|..|||||..| .|| ||.|
BL03962___ywh 1609 ACATCTGTTACCGGCCGGACGATCGCAGATCAGCTGACGCG-CCGATACG 1657
BSNT_05736___ 1661 CCGGAAAATCAGGAACCACCAGCGCAGACAGCTGGATGATCGGCTTCAAT 1710
||||||||||.|||||.||||||.|.||||||||||||||||||||..||
BL03962___ywh 1658 CCGGAAAATCGGGAACGACCAGCACCGACAGCTGGATGATCGGCTTTTAT 1707
BSNT_05736___ 1711 CCGAAACTGGCCGCAGGTGTTTGGACCGGCTATGACAAAAACAGCACCAT 1760
||....||.||..||||.||.|||||.||.|||||||||.|..|.||.||
BL03962___ywh 1708 CCCGGTCTTGCTTCAGGCGTGTGGACGGGATATGACAAAGAGCGGACAAT 1757
BSNT_05736___ 1761 CGACTCGGTCGAAGAAAAAAGCTATGCTAAAACCATTTGGGCGGACTTCA 1810
|||..|.||||.|||.||||.||||||.|||...||||||||.||.||.|
BL03962___ywh 1758 CGATGCCGTCGCAGAGAAAAACTATGCCAAACAAATTTGGGCTGAGTTTA 1807
BSNT_05736___ 1811 TGGAGAACGCGCTCAAGGGCGATCCGGAAACCGCGTTCAAGCCGCCAAAA 1860
||||.||.|||||..|.|.||..||.|...|.||.||.|.||||||..||
BL03962___ywh 1808 TGGAAAAAGCGCTTGAAGACGCGCCCGCCGCAGCTTTAATGCCGCCTGAA 1857
BSNT_05736___ 1861 GGCGTAACCGGTGTGTACATTGATCCGGAAACAGGCTACTCATCAGGTCC 1910
|||||.|..||..|||||||.||.||||..|||||.||..|..|.|..||
BL03962___ywh 1858 GGCGTGAAAGGGATGTACATCGACCCGGCTACAGGTTATGCGGCGGCGCC 1907
BSNT_05736___ 1911 CGGCTGTGCCG-CTAAGCATTACACATATTTTGTGAAAGGGACAGAACCC 1959
|.|||| .||| |.||..|||.|.|.||||||.|.|||||.||.||||||
BL03962___ywh 1908 CAGCTG-CCCGTCCAAATATTTCGCTTATTTTATCAAAGGTACTGAACCC 1956
BSNT_05736___ 1960 GCAAACGTGTGCTACGG---GGCA---------GAACCCGCAAAAC---- 1993
|...|.||.|||||.|| ||.| || |||||||
BL03962___ywh 1957 GAGCAGGTTTGCTATGGAAAGGAAATCTATAAGGA----GCAAAACGCCG 2002
BSNT_05736___ 1994 --AAACAAAAGACCG--GCTTCCATCCA-AAGAAAAGCCTGCTTCCGAGA 2038
.|..|||||.||| |||.||..||| ||| || |.
BL03962___ywh 2003 GGCACGAAAAGCCCGCCGCTCCCCCCCATAAG-------------CG-GC 2038
BSNT_05736___ 2039 AAAAGTGGTGGGACAAATGGCT-----GGGGCGACATCATTGA 2076
|||||||||||||.||||||.| ..||.|| ||.|
BL03962___ywh 2039 AAAAGTGGTGGGAAAAATGGTTTAAAAAAGGAGA-ATAA---- 2076
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