Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04669 and BL05320

See Amino acid alignment / Visit BSNT_04669 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:49
# Commandline: needle
#    -asequence dna-align/BSNT_04669___yuzC.1.5803.seq
#    -bsequence dna-align/BL05320___yuzC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04669___yuzC-BL05320___yuzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04669___yuzC-BL05320___yuzC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04669___yuzC
# 2: BL05320___yuzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 435
# Identity:     205/435 (47.1%)
# Similarity:   205/435 (47.1%)
# Gaps:         162/435 (37.2%)
# Score: 398.0
# 
#
#=======================================

BSNT_04669___      1 ATGAGATATCGTTATCC------CTGGTTTTACGTGTATCCGTATGAGGT     44
                             |.|.| |||      .||.||||...||.||||.|||.|   
BL05320___yuz      1 --------TTGCT-TCCTCCTCATTGCTTTTGGATGCATCCATATCA---     38

BSNT_04669___     45 ACGCCGTCCGCCCGCTCCTGCCAACAATATTGATACCTTTATCC----GT     90
                     || .||||.|       |||||         |..|..|.|||||    ||
BL05320___yuz     39 AC-ACGTCAG-------CTGCC---------GGCAGGTCTATCCCGAAGT     71

BSNT_04669___     91 TCAGCGAGGCAG-GCCGCAGGGATATTTGCG----------GATGC--CC    127
                     |||   ||.||| |||       |..|||||          ||.||  ..
BL05320___yuz     72 TCA---AGTCAGCGCC-------TTATTGCGCTCGGCAAAAGAAGCGGAG    111

BSNT_04669___    128 AGCTCGTT--CT--CGGCC---GCATT----GCGGGCTCGCGGGAGCTCT    166
                     ||||.|.|  ||  |||.|   |.|||    ||.||||..|   ||| ||
BL05320___yuz    112 AGCTTGATGGCTGACGGACAGAGAATTTTAAGCAGGCTTTC---AGC-CT    157

BSNT_04669___    167 CGCG----------CCGC--ATTCTGACCGCAGCC--GAGCAGTCCGATA    202
                     ||||          |.||  ||..||||.||.|||  .|||| .||.|.|
BL05320___yuz    158 CGCGTACTTTGGCCCAGCAAATCATGACGGCTGCCCAAAGCA-ACCAAAA    206

BSNT_04669___    203 AACAAA--------CCATCAAGCGCCTGATCAAACAAATGGGTGTCCG--    242
                     ||..||        ||     ||||    |||..||||..||.|||||  
BL05320___yuz    207 AAATAACGTGCTGGCC-----GCGC----TCAGGCAAACCGGCGTCCGCA    247

BSNT_04669___    243 ----GCATGAAGTG---GATACGGTCTTTAATCCCGACGGCATCTATATC    285
                         ||.|||  ||   .||.||       |||||||||||||....|||
BL05320___yuz    248 GCCAGCTTGA--TGCCTCATTCG-------ATCCCGACGGCATTCGCATC    288

BSNT_04669___    286 AGCCTTATCGGAACGCAAAGCCGAATCATTCTTGCT-TTGCGGTGGTCAG    334
                     |..||.|||.|..|.|..|||.||.| ||||.|||| |||||.|||||..
BL05320___yuz    289 ATGCTCATCAGCCCCCGCAGCAGACT-ATTCCTGCTATTGCGTTGGTCTT    337

BSNT_04669___    335 AGGACCGCAATCATTTTGCGTCCATAAGATTATGA    369
                     ||                                 
BL05320___yuz    338 AG---------------------------------    339


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