Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_06131 and BPUM_0236

See Amino acid alignment / Visit BSNT_06131 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:37
# Commandline: needle
#    -asequence dna-align/BSNT_06131___yxaG.1.24716.seq
#    -bsequence dna-align/BPUM_0236___yxaG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06131___yxaG-BPUM_0236___yxaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06131___yxaG-BPUM_0236___yxaG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06131___yxaG
# 2: BPUM_0236___yxaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1233
# Identity:     606/1233 (49.1%)
# Similarity:   606/1233 (49.1%)
# Gaps:         408/1233 (33.1%)
# Score: 1157.5
# 
#
#=======================================

BSNT_06131___      1 ATGAAAACATTATGT--------ACACATTC-ATTGCCTAAAGAAA----     37
                                ||||        .|.||.|| |     |.|||.||    
BPUM_0236___y      1 -----------ATGTCGGAGCAACCGCAATCGA-----TCAAGCAATCCG     34

BSNT_06131___     38 AA-------------ATGCCTTATTTGCTCCGGAGCGGAGAAGGCGAGCG     74
                     ||             ||.||.|.|.||.|.|.|   |||           
BPUM_0236___y     35 AAGGTACCTCTTTTTATACCGTGTCTGGTTCAG---GGA-----------     70

BSNT_06131___     75 CTATCTGT-TCGGC-----AGACAGGTTGCCACGGTGATG-GCGAATGGG    117
                       |.|||| |.|||     |..|||.||     |.|.||| ||   |||.
BPUM_0236___y     71 --AACTGTATGGGCTGGAAAATCAGCTT-----GTTCATGTGC---TGGC    110

BSNT_06131___    118 AGGAGCA---CAGGTGATT----TGTTTGAGATCGTGCTT-CTTTCCGGG    159
                     ||.||||   ||...||.|    ||||||||.|.|| ||| .|..|.||.
BPUM_0236___y    111 AGAAGCAAATCAAACGAATCAGCTGTTTGAGCTTGT-CTTAATCACAGGT    159

BSNT_06131___    160 GGAAAAGGAGATGCCTTTCCGCTTCAC-GTCCACAAGGACACACATGAAG    208
                     ||.|||||||.|...|||||.|||||| || ||..||.||..|..||||.
BPUM_0236___y    160 GGGAAAGGAGCTTATTTTCCACTTCACTGT-CATGAGCACTTATTTGAAA    208

BSNT_06131___    209 GAATTCTCGTTTTGGACGGGAAACTGGAACTGACACTT-GACGGTGAACG    257
                     ..||..|.||..||||.||.||.||.||..||| .||| ||||||.||  
BPUM_0236___y    209 CCATATTTGTGCTGGAAGGAAAGCTTGAGGTGA-TCTTGGACGGTAAA--    255

BSNT_06131___    258 CTATTTATTAATATCAGGT----------GATTATGCCAACATTCCGGCG    297
                             .|||||..|||          ||||||....|.||.|||.|.
BPUM_0236___y    256 --------AAATATATGGTCACAGCCTTCGATTATATTCATATCCCGCCC    297

BSNT_06131___    298 GGAACACCGCACAGCTACCGGATGCAGAGCCACAGAACAAGACTGGTGTC    347
                     ..||||...||..|||||.|.|||||.||.||||.||||.||.|..|.||
BPUM_0236___y    298 AAAACAATCCATGGCTACAGAATGCATAGTCACAAAACACGATTTATTTC    347

BSNT_06131___    348 CTACACGATGAAAGGAAACGTAGCG-CACTTGTAT-TCCG-TTATTGGGA    394
                     .||.|||.||...|||||   |..| ||..|||.| ||.| ..|||||||
BPUM_0236___y    348 ATATACGTTGGGCGGAAA---AATGACAGATGTCTATCAGCAAATTGGGA    394

BSNT_06131___    395 ATCCGTATGATCACGCTGAACATCCGCCGTACGCAAG--CGAAGAAGTCT    442
                     |          .|.|||.||     ||.|.|||.|.|  ||         
BPUM_0236___y    395 A----------AAAGCTTAA-----GCGGAACGAATGGCCG---------    420

BSNT_06131___    443 CAAACGAGCGAT-TTGC---AGAAGCAGCCGCTGTAGCGGACATTGTATT    488
                        |.||.|||| ||||   .||.|||||     ||||          ||
BPUM_0236___y    421 ---ATGACCGATCTTGCTTTCGATGCAGC-----TAGC----------TT    452

BSNT_06131___    489 T---CTAGATG--AAGGAAAGC------------CTGCATG---TTCGGC    518
                     |   |.||.||  ||.||||||            .||||||   |.||||
BPUM_0236___y    453 TGAACAAGCTGAAAAAGAAAGCGATCTCATATTGATGCATGGTATCCGGC    502

BSNT_06131___    519 ---------------CAAA----------TTAGCGGAACTTACAGAG-CT    542
                                    ||||          |||       ||.||.|| ||
BPUM_0236___y    503 AGCTGTCCAATACAACAAAGCCCTCCGTTTTA-------TTTCATAGTCT    545

BSNT_06131___    543 GC-----CAGATGGAGCGGTTCCATACGTTCTTGAATCTGGAGAAGG---    584
                     ||     |||..||.||.|  ||.|||||..|.||..||||.|||||   
BPUM_0236___y    546 GCTCCCTCAGGCGGTGCAG--CCTTACGTATTAGAGGCTGGTGAAGGGAA    593

BSNT_06131___    585 -----AGATCGCCTGTTGACTGGAGATCAGC--------TTCACCGCATT    621
                          |.||    |||.|| |||   |||||        ||.|.||||  
BPUM_0236___y    594 GCAATATAT----TGTGGA-TGG---TCAGCTACATGAGTTGATCGCA--    633

BSNT_06131___    622 GTGGCTGCACAAAAAAATACA----GATGGCCAGTTTA-TCGTCGTATCC    666
                             ||||.|.|| |||    || |||..|||.| ||.|..|.|..
BPUM_0236___y    634 --------ACAACAGAA-ACAACTGGA-GGCGGGTTCACTCATTTTGTAA    673

BSNT_06131___    667 TCTGAAGGCCCTAAAGGTGA----------CCGAATCGTTGATCACTACC    706
                     || ||||||.|.|||||..|          |||          ||.||.|
BPUM_0236___y    674 TC-GAAGGCGCGAAAGGAAAATATTTTCCCCCG----------CATTATC    712

BSNT_06131___    707 ATGAACATCATACAGAAACATTTTATTGCCTTGAAGGTCAGATGACGATG    756
                     ||.||...|||||||||.||.|.||||||.||||.||..|.||||  ||.
BPUM_0236___y    713 ATCAAGTACATACAGAAGCACTCTATTGCGTTGAGGGAAAAATGA--ATC    760

BSNT_06131___    757 TGGGCAG----ATGGCCAGGAAATTCAGCTGAATCCGGGAGATTTCCTGC    802
                     |  .|||    |.||..||||.||....||||..||.||.||.||  |||
BPUM_0236___y    761 T--TCAGTTGAACGGAGAGGATATATGCCTGATGCCAGGTGACTT--TGC    806

BSNT_06131___    803 --ATGTCCCTGCAAATACCGTTCACTCCTATCGCCTTGATTCTCA--CTA    848
                       ||.|.||..|..||||.||||||||.|||....|||..|||||  |||
BPUM_0236___y    807 CTATATACCGCCGTATACGGTTCACTCTTATGAATTTGTGTCTCATTCTA    856

BSNT_06131___    849 ---------TAC----------------AAAGATGGTGGGC-GTATTGGT    872
                              |||                ||||||  ||.|| |       
BPUM_0236___y    857 ATAAATTTTTACTTTTGCTGCTCCCGGGAAAGAT--TGAGCAG-------    897

BSNT_06131___    873 TCCTGGTTTATTTGAACCGTTTTTCCGGACGTTAGGCG----ACCC--GT    916
                            ||.|.|||.|.||||     ||.|  |.|||    .|||  ||
BPUM_0236___y    898 -------TTGTATGAGCAGTTT-----GAAG--AAGCGCAAAGCCCGAGT    933

BSNT_06131___    917 ATGAAGGCCACATCTTCCCATGTGAGCCTC----AGGCTTTGCACTT--T    960
                     || |.|.||..||.||   ||       ||    |||    |.||||  |
BPUM_0236___y    934 AT-ATGTCCTTATTTT---AT-------TCAAGAAGG----GAACTTGAT    968

BSNT_06131___    961 GATCG--CG------TTTTGCAGAATATCGAAGCATTAGATTTAAAGGTA   1002
                     |||||  ||      ||.|.|..|||||          |||||       
BPUM_0236___y    969 GATCGATCGAGAGACTTCTTCTCAATAT----------GATTT-------   1001

BSNT_06131___   1003 GATTATCGGGCTGATATTGTATCGGCTCGATGA   1035
                            ||.|| .|||||.|...|   |||.|
BPUM_0236___y   1002 -------GGTCT-TTATTGAAAAAG---GATAA   1023


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.