Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05742 and BPUM_0238
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_05742___ywhA.1.24716.seq
# -bsequence dna-align/BPUM_0238.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05742___ywhA-BPUM_0238.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05742___ywhA-BPUM_0238.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05742___ywhA
# 2: BPUM_0238
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity: 298/468 (63.7%)
# Similarity: 298/468 (63.7%)
# Gaps: 78/468 (16.7%)
# Score: 902.5
#
#
#=======================================
BSNT_05742___ 1 ATGGACCATGACAAACTGGAAGCAAATTTGCTGGATCACGCACTTACAAA 50
|||.|.|||..|.|.||.||.||||.|||..|.||.||.||.||.|||||
BPUM_0238 1 ATGCAACATTTCGAGCTAGAGGCAAGTTTATTAGACCATGCGCTGACAAA 50
BSNT_05742___ 51 ATATTTGAAAAGC-ACGAAGCAATTAGATGAAGCCACCGTTCCGAAACAC 99
.||||| |||||| |||||.|||.|||||||||..|.|.|.||||||.||
BPUM_0238 51 GTATTT-AAAAGCGACGAAACAAATAGATGAAGAGAACATCCCGAAAAAC 99
BSNT_05742___ 100 GTGAATAATGTAAGAGGGTTTATTCTGCGGATCATATACAGACATGGGAG 149
||.|..|||||.|.||||||||||.|.||.|||||.||..|.|||
BPUM_0238 100 GTCACGAATGTGAAAGGGTTTATTTTACGCATCATTTATCGTCAT----- 144
BSNT_05742___ 150 C-----TGCACCATAAAGGATATTTTGAAGGAGGTCACACTGTCTCCCTC 194
| ||.||..|.||..|||||.|..||||.||..||.|.||||||||
BPUM_0238 145 CAATCATGTACTGTGAAAAATATTCTACAGGAAGTTTCATTATCTCCCTC 194
BSNT_05742___ 195 TGCCACGACCACAGCTCTGAATCATTTAGAGCAGGAAGGGTTTATTGAGA 244
|||.||.||.||.|||||.|||||.|||||..|.||||||.|.|||
BPUM_0238 195 TGCAACAACAACCGCTCTCAATCACTTAGAAGATGAAGGGCTCATT---- 240
BSNT_05742___ 245 GATCC-----AGAAATAACAATGACCGCCGCACTGTATGGATTACGCTTT 289
|||| .|||||||.||||||||.||.||||||||||||...||.|
BPUM_0238 241 -ATCCGCTCTCGAAATAATAATGACCGTCGTACTGTATGGATTGAACTCT 289
BSNT_05742___ 290 CTGAATCGGGCCGGGGAGC----GGCTGAACAAATGATCGAAAACCGCCA 335
|||||| |.||.||.| .||..|||||||||||||.||||||||
BPUM_0238 290 CTGAAT----CTGGTGAACAAATTGCAAAACAAATGATCGACAACCGCCA 335
BSNT_05742___ 336 GCAGCTGATTG--------ACGGCATGTTTGA--ACGTTTAACAGCCGAA 375
|||| .|.|| ||||..| ||.||| |||..|||
BPUM_0238 336 -------ATTGCTTGTCAATCAGC-TGTTCAACCACCTTT--CAGAAGAA 375
BSNT_05742___ 376 GAGAAAGAGACGTTCTTGGCGATT-ATTG-------------CGAAGC-- 409
||.|||.|.||.||.||.| .||| |||| || |||
BPUM_0238 376 GATAAAAAAACATTTTTTG-AATTAATTGAAAAAATGATGGACG-AGCAT 423
BSNT_05742___ 410 -------TGGCTCAATAG 420
.|||| |||
BPUM_0238 424 ACATTAAAGGCT---TAG 438
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