Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00730 and BPUM_0239

See Amino acid alignment / Visit BSNT_00730 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:30
# Commandline: needle
#    -asequence dna-align/BSNT_00730___ydaB.1.24716.seq
#    -bsequence dna-align/BPUM_0239___ydaB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00730___ydaB-BPUM_0239___ydaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00730___ydaB-BPUM_0239___ydaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00730___ydaB
# 2: BPUM_0239___ydaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1675
# Identity:     998/1675 (59.6%)
# Similarity:   998/1675 (59.6%)
# Gaps:         329/1675 (19.6%)
# Score: 2455.5
# 
#
#=======================================

BSNT_00730___      1 ATGGAA-ACATTACA-GCATCTGATTCTGCATGACATGCCGAAT--AGCG     46
                      |.||| |||||||| ||||    |.||..|.||||    ||||  |.||
BPUM_0239___y      1 -TTGAATACATTACAGGCAT----TACTTAACGACA----GAATGGAACG     41

BSNT_00730___     47 -----AAGAAATAGAGGCTGTAAAAAGCGGAGACCATACACTG-------     84
                          .|.||||.||.||.||||...||||.|        .||       
BPUM_0239___y     42 CTCTTCACAAATTGAAGCGGTAACTGGCGGGG--------GTGTGTCTTA     83

BSNT_00730___     85 -ACATATAAAGGTTACCGTAAA-CGGATTAATCAGCTGGC-GAATGCCAT    131
                      ||||.|.|||..|| .|.||| ||.|||.|.|||||.|| .|.|.|| |
BPUM_0239___y     84 TACATTTGAAGAATA-TGCAAAGCGCATTGACCAGCTTGCTCACTACC-T    131

BSNT_00730___    132 GCTTCAAAAAGGAATTC-AAAAGGGCGACCGTG-TTGCATTGCTTTGCAA    179
                     .|.||||||.||.|||| |||||||| |||||| |||| ||..|||||.|
BPUM_0239___y    132 ACATCAAAAGGGGATTCGAAAAGGGC-ACCGTGTTTGC-TTTATTTGCCA    179

BSNT_00730___    180 AAACGGCCATCCCGCA----TCAACTGTTATGTTCGCCGCGCTTGAAA-T    224
                     |||   |||||.| ||    |||||..|||||.|.||.|| |.|.||| .
BPUM_0239___y    180 AAA---CCATCAC-CACTTTTCAACGATTATGCTGGCAGC-CATCAAAGC    224

BSNT_00730___    225 AGGTGCTGTTGTCGTACCTGTCAGCTGGCAGCTGAAACCATATGAAATGA    274
                     ||||||.||.|..||.||..|.|||||||||||.|...|.|.|||..||.
BPUM_0239___y    225 AGGTGCAGTCGCAGTTCCGCTTAGCTGGCAGCTTACTTCCTTTGAGCTGG    274

BSNT_00730___    275 CAGGCATTTT---AAAAGCAAGTGAACCGAAAGC--GATGTTTTACGGAG    319
                     .|||.|||||   |||||||   |||||.||.||  .||.||||   ||.
BPUM_0239___y    275 AAGGTATTTTGAAAAAAGCA---GAACCAAAGGCTTTATTTTTT---GAC    318

BSNT_00730___    320 CG-GAGTTTAAAGAGATACTGGATGAAGT---TCTACCT---GA--ATTG    360
                     || ||.||....||.||..|.|..|.|||   |.||.||   ||  ||||
BPUM_0239___y    319 CGTGAATTCCGTGACATCATTGCGGCAGTGAATGTATCTTTAGAAGATTG    368

BSNT_00730___    361 TCCTCACTGT--------GTGTAACAATG-GAAACAGGAACAGCTTACGA    401
                      |||.|..||        ||||  ||||| ||||            ||.|
BPUM_0239___y    369 -CCTGATGGTGGAATCCGGTGT--CAATGCGAAA------------ACAA    403

BSNT_00730___    402 AACATCTGCTGAATTTGAAGCGCTGTTTGCAGGTC--CTGAT-------C    442
                     .|||.|||     |||||.|...|.||.|||  ||  .||||       .
BPUM_0239___y    404 CACAGCTG-----TTTGAGGACATTTTGGCA--TCAAATGATGGCAGTAA    446

BSNT_00730___    443 ATTTGCCAGAGACGGAAATGGTTTCACCTGATGATACAGCACTTCTGATG    492
                     |.||||...|||       |||.|||...||.|||..|||      ||||
BPUM_0239___y    447 ACTTGCTGTAGA-------GGTATCAGAAGAGGATCTAGC------GATG    483

BSNT_00730___    493 ------TTTACATCTGGAACAACGGGAAACCCGAAAAGATGCATGATTAC    536
                           ||.||.|||||||||||.||.||.||.|||.||||.|||.|...
BPUM_0239___y    484 ATTTTATTCACCTCTGGAACAACAGGCAATCCAAAAGGATGTATGGTCGG    533

BSNT_00730___    537 ACATGGCGGCATATA-CAGATACGTTAAAAAATCCAACAGCT--CAAT--    581
                     ||||||..|.||.|| ||   |..||.||     |||.|..|  .|||  
BPUM_0239___y    534 ACATGGGCGAATCTATCA---ATTTTTAA-----CAAGACGTGGGAATCG    575

BSNT_00730___    582 AGCA--CG-TATGAAGGGCCTTCGTTTTCTCGCGTGCCATCCGATTTATC    628
                     ||.|  || |.||||.||....||.|.|.|.|||.|.||||||.|.||||
BPUM_0239___y    576 AGGATTCGATCTGAAAGGAAAACGATATTTGGCGAGTCATCCGTTGTATC    625

BSNT_00730___    629 ATACGAGTGCGCTCATTTGCATCA--TGCTTGGA---ACGTTTGCAG---    670
                     |||.||||    |||.|| .||||  ||.|||.|   .||.|||.||   
BPUM_0239___y    626 ATATGAGT----TCAATT-AATCACCTGATTGCAGCCGCGATTGAAGGGT    670

BSNT_00730___    671 AAACAACCTT-TGTGTTTACAAAGGATCAAGATCCTGTTCACATGCTGAA    719
                     |.|||  ||| |.|.||||        ||.|||.||    |||  |.|||
BPUM_0239___y    671 ATACA--CTTGTCTTTTTA--------CATGATGCT----ACA--CCGAA    704

BSNT_00730___    720 GGTCATTGAAGAA------GAGAA------AATTCAGACCGTGATGGCTC    757
                     ...||||..||||      |||||      ||||..|..|.|||||||| 
BPUM_0239___y    705 ACGCATTTTAGAAACGATTGAGAAAGAAAGAATTACGTTCATGATGGCT-    753

BSNT_00730___    758 TTCC--TGTGTTTTACACGTATTTGCTTGAGGCGTGG----GAAACGC--    799
                     ||||  |..| .|||||||||..||||.||     .|    |||||||  
BPUM_0239___y    754 TTCCCATCAG-CTTACACGTACATGCTAGA-----AGAAATGAAACGCGG    797

BSNT_00730___    800 -----ACCAAACTGACTTATCTTCACTTGTTATTTTAATGACAGGCGGAA    844
                          ||.|   |..||.|||||   |||..|||..|||..|.|||||.|
BPUM_0239___y    798 TTCGTACGA---TCTCTCATCTT---TTGAAATTGCAATTTCTGGCGGTA    841

BSNT_00730___    845 CAAAAGTGCCGAGCA-GCCTAATCCGCCGCTATCTTGATATT--------    885
                     |.||.|||||| |.| ||.||||           |..|.|||        
BPUM_0239___y    842 CGAAGGTGCCG-GTACGCTTAAT-----------TAAAGATTACAAAGAA    879

BSNT_00730___    886 ---GGCATTCCGCTCGCGCATGGCTATGGAAGCACTGAGGCTTGGGGCAT    932
                        |||||||.|.|...|||||||||||||||.||.||.||.||||...|
BPUM_0239___y    880 GTAGGCATTCAGATGATGCATGGCTATGGAAGTACGGAAGCATGGGTTGT    929

BSNT_00730___    933 CAGCACATGGACGCCTGATATGGGAATGGATAAAGCGGCATCTGCAGGAA    982
                     .||..|.|||...||.|..|||||...|||||||..||..|||||.||.|
BPUM_0239___y    930 GAGTGCGTGGCATCCAGCGATGGGCGAGGATAAAATGGGCTCTGCGGGTA    979

BSNT_00730___    983 AACCTGTGG---CAGGTGTTAAAGTCAAAGTGGAAGATCCTCTGACCGGA   1029
                     ||   ||||   |||.|||..||||.|||.|.|...|.|||..|||   |
BPUM_0239___y    980 AA---GTGGATCCAGATGTAGAAGTGAAAATCGTGCACCCTGAGAC---A   1023

BSNT_00730___   1030 GA--AGAACTTCCTCA--AGGAGAAATCGGCGAAATCGTTGTTCAT----   1071
                     ||  |||..||.| ||  .||||||||.||.|||.|||    ||||    
BPUM_0239___y   1024 GACGAGACATTGC-CAGCTGGAGAAATTGGTGAAGTCG----TCATGAGA   1068

BSNT_00730___   1072 ACTCCATTCTTATTT-AAAGGCTATGAAGACAATCCTGAAGCAACAGCGA   1120
                     |..||||| |||||| ..||||||..|..|..|.|||||.||.||||.||
BPUM_0239___y   1069 AGCCCATT-TTATTTCTTAGGCTACTATCATCAGCCTGACGCTACAGAGA   1117

BSNT_00730___   1121 AAGTGCTGCAAA-ATGGATGGTTTAGAACC-----GGAGATTCAGGATAT   1164
                     |.||.|| |||| ||||.|||||     ||     ||||||.||||||||
BPUM_0239___y   1118 AGGTACT-CAAAGATGGCTGGTT-----CCATATGGGAGATGCAGGATAT   1161

BSNT_00730___   1165 GTAGATGAAGATGGCTTTATTTTCATCACGGGACGCTACAAGGATGTCAT   1214
                     .||||||||||.||.|||.||||||||||.||..|.|||||.|||||.||
BPUM_0239___y   1162 TTAGATGAAGACGGTTTTCTTTTCATCACAGGTAGATACAAAGATGTGAT   1211

BSNT_00730___   1215 TATTTACGGAGGCGATAACGTCTATCCTGATCAGGTTGAAGAAGTTATCC   1264
                     |.|||||||.||.|||||..||||||||||.||.||.||||||||.||..
BPUM_0239___y   1212 TCTTTACGGCGGGGATAATATCTATCCTGACCAAGTAGAAGAAGTCATTG   1261

BSNT_00730___   1265 AGCAGATCCCGGGAATCCTTGAAACGGCTG----TGGTCGGTATTCCAGA   1310
                     |.||.||.||.||..|..|||||.|.||||    |||  ||||  ||.||
BPUM_0239___y   1262 ATCAAATTCCAGGTGTGATTGAATCAGCTGTTATTGG--GGTA--CCGGA   1307

BSNT_00730___   1311 CCCGCTTTACGGTGAAAAACCGAAAGCTTTTATCGTGAAAA----ATGGC   1356
                     |....|.||.||||||...||.|..||.|.|||||| ||||    ||..|
BPUM_0239___y   1308 CGAATTATATGGTGAAGTGCCAAGTGCGTATATCGT-AAAAGACGATTCC   1356

BSNT_00730___   1357 GGCCA-----GCGCATCACGGAAGAGGATGTCATCGCA-TTTTGTAAAGA   1400
                     |.|.|     ||        |||||.|||||..| |.| |.|||..|.||
BPUM_0239___y   1357 GTCGATTTTTGC--------GAAGAAGATGTGGT-GAACTATTGCCAGGA   1397

BSNT_00730___   1401 ACGCCTGTCCGCTTACAAAATACCTGAAGTTGAATT--TGTTAAC----G   1444
                     |||..||.|.|.|||||||.|.||     .|..|||  | ||.||    |
BPUM_0239___y   1398 ACGTTTGGCAGATTACAAAGTGCC-----CTCCATTCAT-TTCACACAGG   1441

BSNT_00730___   1445 AACTGCCGAAAAACAACCTTGGCAA---GGTGAAAAAAG----ACGTCCT   1487
                     |.|||||.||||||||.|||||.||   ..||||.||||    ||||   
BPUM_0239___y   1442 AGCTGCCAAAAAACAAGCTTGGTAAAATCATGAAGAAAGATTTACGT---   1488

BSNT_00730___   1488 GCGCAATCAGGCTGTACATTCATAA   1512
                        .||| .||.|||..||.|.||.
BPUM_0239___y   1489 ---GAAT-TGGTTGTGAATGCGTAG   1509


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