Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00547 and BPUM_0287
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:21
# Commandline: needle
# -asequence dna-align/BSNT_00547.1.24716.seq
# -bsequence dna-align/BPUM_0287___ycgH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00547-BPUM_0287___ycgH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00547-BPUM_0287___ycgH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00547
# 2: BPUM_0287___ycgH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1402
# Identity: 339/1402 (24.2%)
# Similarity: 339/1402 (24.2%)
# Gaps: 947/1402 (67.5%)
# Score: 931.5
#
#
#=======================================
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 1 ATGTCATTGAAACAGAAAGGTGTTGCACATGCATTGAAAGAAGAACAAAC 50
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 51 TTTATCTTGGTGGCAGCTTTCTCTCATCGGAGTCGGCTGTACGATTGGCA 100
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 101 CTGGTTTCTTCCTTGGTTCCAGCATTGCCATTACGAAGTCCGGTTTTTCC 150
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 151 GTCTGCATCTCTTTTTTACTTGCTGCGGTTGGGACTTATCTCGTCTTTAA 200
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 201 ACATTTGGCTGCGATGACAGCTGATAACCCTGATAAAGGGTCGTTTTGCT 250
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 251 CTTATGCTCGTAAAGCATATGGACGCTGGGCAGGGTTTAGCAATGGCTGG 300
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 301 GTGTATTGGTTCGCAGAAATGCTCATTACAGGAAGTCAGTTAACAGCGAT 350
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 351 TTCCCTTTTTACACGACACTGGTTTCCATCTGTGCCGCTCTGGGTGTTTT 400
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 401 CTGCCATTTATTCTGCTCTTGCCCTGCTCGTGATTATCATAGGGCTCTCT 450
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 451 TCTTTTCAAAAGACAGAAAATGTCCTTGCGGTACTCAAGACAGCGGCGAT 500
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 501 TTTTCTGTTTATGATTCTTGCAGTGCTGGTGTTATTCGGCATTCTGACAG 550
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 551 ATCATAAACCGACCCTGCATCTGCCAAACAAAGATCACGAATGGATGCCG 600
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 601 CTCGGTGCACTTGGTCTTTGGAATGGATTGATTTATGCGTTTTATGCATT 650
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 651 TGGGGGAATTGAGGTCATGGGGCTGATGGCGGTTCATTTAAAAGACCCGA 700
BSNT_00547 1 --------------------------ATGCTGGCGACGCTGGCGATTATT 24
||||||...|..||.|||.|.||.
BPUM_0287___y 701 AGGATGCAGCAAAATCTGGACGTGTCATGCTGATCATTCTAGCGGTCATC 750
BSNT_00547 25 TATATCATTTCAATCGGGCTTGCTCTGCTTTTGGTTCC-GTTACACGCGT 73
||||||.|.|||||.||.||||||||.||..|.||.|| ||.||| ||.|
BPUM_0287___y 751 TATATCGTCTCAATTGGTCTTGCTCTCCTCCTTGTCCCGGTGACA-GCCT 799
BSNT_00547 74 TTA--CTGAACAGGACAGTCCGTTCATTACATCATTAAAAGGAT--ATAA 119
||| ..|||||| ||||||.||.|||||||||||| ||| ||..
BPUM_0287___y 800 TTAACGAGAACAG--CAGTCCATTTATTACATCATTA----GATCCATTT 843
BSNT_00547 120 CCTTGA--GATCATCCTTGATATATTTAACGGGATTTTCATCATCGCCGG 167
|.||.| ||||.|.|||.||||.|||||.||.||||||||.||.|||||
BPUM_0287___y 844 CATTTATCGATCTTTCTTCATATCTTTAATGGCATTTTCATAATTGCCGG 893
BSNT_00547 168 GTTCTCGACCCTTGTCGCTTCGCTTTTTGCCGTTACGACATTGCTTTGTA 217
.||.||.||..|.||.||.||.||.|.|||.||.|||||.||.|||.|.|
BPUM_0287___y 894 CTTTTCAACATTGGTTGCCTCTCTCTATGCAGTCACGACGTTACTTGGCA 943
BSNT_00547 218 CAATGGCTGATGACGGC-----GACGCGCCGAAATGCTT-TACTCTAAAG 261
|.|||.|.|| || ||.||.|| ||||| | |.||||
BPUM_0287___y 944 CGATGTCGGA-----GCATCAAGATGCACC----TGCTTGT--TTTAAA- 981
BSNT_00547 262 GAAGGCAAAAAAA-------TATGCTGGCCGGCACTTC--------TGAC 296
||||||.| .|||..||..||| |||| |.||
BPUM_0287___y 982 -----CAAAAAGACCCATCTCATGTCGGTTGGC-CTTCGATTATTTTAAC 1025
BSNT_00547 297 GTTTGCGGGGCTTGTCCTCTCCATT-ATTCTGTCGTTAGTGC-------- 337
|..|||.|| ||| |||.|||||.|..|||
BPUM_0287___y 1026 GGCTGCTGG-------------ATTAATTGTGTCGATTTTGCTTGCACTC 1062
BSNT_00547 338 ----TGCCTAAAAACATTTATGAGCATATGACAACAGCTGCGGGGCTTAT 383
||.|.|||.||||.||.||||||.|.||||||||.||.||.||||.
BPUM_0287___y 1063 TTTTTGTCCAAACACATCTACGAGCATCTCACAACAGCAGCCGGTCTTAC 1112
BSNT_00547 384 GCTTTTATACACTTGGCTGTTTATCATGTTCTCCAGCAAAAAGCTGACTG 433
.|||.|.||.||.|||.|.||.||..|||||||.||.|||||.||
BPUM_0287___y 1113 CCTTCTGTATACATGGGTCTTCATTCTGTTCTCAAGTAAAAAACT----- 1157
BSNT_00547 434 ATCCCGAGGGCAT------GGGAAAAACGCAAA---TTTATTG---TTC- 470
|| |.|.|.||| |..|||...||.|| |||.||| |||
BPUM_0287___y 1158 AT--CAAAGCCATCCACTCGCCAAACGTGCGAAATGTTTCTTGCGCTTCT 1205
BSNT_00547 471 --TGATTGCTGCGGCTGTGTCCGGTACATTGTTTGA-------------- 504
||||||..||.||..|.||.||.|| |||.|
BPUM_0287___y 1206 CTTGATTGGAGCCGCCATTTCAGGCAC----TTTAACAGAGGCAAGCGGA 1251
BSNT_00547 504 -------------------------------------------------- 504
BPUM_0287___y 1252 CGACCCGGCTTTTTTATCAGCCTTGGGATCATTGCAGTGATTGCCGTCAT 1301
BSNT_00547 504 -------------------------------------------------- 504
BPUM_0287___y 1302 GGTGCTATTTATGAGGAAAAAGTGGAAGCAGCAGGATCAGACCGCATCAT 1351
BSNT_00547 504 -- 504
BPUM_0287___y 1352 AA 1353
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