Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00547 and BPUM_0287
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:21
# Commandline: needle
# -asequence pep-align/BSNT_00547.1.24716.seq
# -bsequence pep-align/BPUM_0287___ycgH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00547-BPUM_0287___ycgH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00547-BPUM_0287___ycgH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00547
# 2: BPUM_0287___ycgH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 452
# Identity: 104/452 (23.0%)
# Similarity: 128/452 (28.3%)
# Gaps: 287/452 (63.5%)
# Score: 481.0
#
#
#=======================================
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 1 MSLKQKGVAHALKEEQTLSWWQLSLIGVGCTIGTGFFLGSSIAITKSGFS 50
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 51 VCISFLLAAVGTYLVFKHLAAMTADNPDKGSFCSYARKAYGRWAGFSNGW 100
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 101 VYWFAEMLITGSQLTAISLFTRHWFPSVPLWVFSAIYSALALLVIIIGLS 150
BSNT_00547 0 -------------------------------------------------- 0
BPUM_0287___y 151 SFQKTENVLAVLKTAAIFLFMILAVLVLFGILTDHKPTLHLPNKDHEWMP 200
BSNT_00547 1 ------------------------------------------MLATLAII 8
||..||:|
BPUM_0287___y 201 LGALGLWNGLIYAFYAFGGIEVMGLMAVHLKDPKDAAKSGRVMLIILAVI 250
BSNT_00547 9 YIISIGLALLLVPLHAFTEQDSPFITSLKGYNLEIILDIFNGIFIIAGFS 58
||:||||||||||:.||.|..|||||||..::|.|.|.||||||||||||
BPUM_0287___y 251 YIVSIGLALLLVPVTAFNENSSPFITSLDPFHLSIFLHIFNGIFIIAGFS 300
BSNT_00547 59 TLVASLFAVTTLLCTMADDGDAPKCFTLKEGKKICWPA-LLTFAGLVLSI 107
||||||:||||||.||::..|||.||..|:...:.||: :||.|||::||
BPUM_0287___y 301 TLVASLYAVTTLLGTMSEHQDAPACFKQKDPSHVGWPSIILTAAGLIVSI 350
BSNT_00547 108 ILSLVLPKNIYEHMTTAAGLMLLYTWLFIMFSSKKLTDP----------- 146
:|:|.|.|:||||:||||||.|||||:||:||||||:.|
BPUM_0287___y 351 LLALFLSKHIYEHLTTAAGLTLLYTWVFILFSSKKLSKPSTRQTCEMFLA 400
BSNT_00547 147 -------------EGMGKTQIYCSDCCGCVRYIV---------------- 167
|..|:...:.| .|.:..|.
BPUM_0287___y 401 LLLIGAAISGTLTEASGRPGFFIS--LGIIAVIAVMVLFMRKKWKQQDQT 448
BSNT_00547 167 -- 167
BPUM_0287___y 449 AS 450
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