Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00655 and BPUM_0343

See Amino acid alignment / Visit BSNT_00655 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:26
# Commandline: needle
#    -asequence dna-align/BSNT_00655___yclF.1.24716.seq
#    -bsequence dna-align/BPUM_0343.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00655___yclF-BPUM_0343.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00655___yclF-BPUM_0343.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00655___yclF
# 2: BPUM_0343
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1553
# Identity:    1046/1553 (67.4%)
# Similarity:  1046/1553 (67.4%)
# Gaps:         133/1553 ( 8.6%)
# Score: 3231.0
# 
#
#=======================================

BSNT_00655___      1 ATGGCTTCGATTGATAACGAAAGTATCATTAAAAGCGTCCCGCAAAAAGG     50
                     |||.||.|.|||||..||||.|..||..|||||||.||.||.||||||||
BPUM_0343          1 ATGTCTACAATTGACCACGATAAAATTGTTAAAAGTGTTCCTCAAAAAGG     50

BSNT_00655___     51 GTTCTTTGGTCACCCGCGAGGACTATTTACACTATTTTTCACCGAATTTT    100
                     |||.|||||.||.||...||||||.|..|||||.||.|||||.|||||||
BPUM_0343         51 GTTTTTTGGACATCCTAAAGGACTTTACACACTGTTCTTCACTGAATTTT    100

BSNT_00655___    101 GGGAGCGTTTCTCTTACTATGGAATGAGAGCAAT-CTTACTTTACTATTT    149
                     |||||||||||||.||.|||||.|||.|.|||.| |||| ||||.|||.|
BPUM_0343        101 GGGAGCGTTTCTCCTATTATGGCATGCGTGCACTGCTTA-TTTATTATAT    149

BSNT_00655___    150 GTATACAGAGACGGTAAACGGAGGGCTCGGCTTTGA-CAAGGGCACTGCG    198
                     |||.||||||..|..|||.||.||.||.||.||||| |||..| ||.||.
BPUM_0343        150 GTACACAGAGGTGACAAAAGGCGGTCTTGGTTTTGATCAAACG-ACAGCC    198

BSNT_00655___    199 GTTGCCATTATGTCGATCTACGGATCACTCGTATACATGTCCACTATTAT    248
                     ..|.|.||.|||||..|||||||..|.||.||.||.|||||....|||||
BPUM_0343        199 AATTCGATCATGTCTGTCTACGGTGCGCTTGTCTATATGTCAGGCATTAT    248

BSNT_00655___    249 TGGCGGATGGCTCGCTGACCGGGTATTCGGTACCGCAAACACCGTGTTTT    298
                     |||.|||||||||||.|||||.|||||||||.|..|.|..||.||.||||
BPUM_0343        249 TGGGGGATGGCTCGCCGACCGCGTATTCGGTTCGTCTAGTACGGTCTTTT    298

BSNT_00655___    299 ACGGCGGCATATTCATTATGTTCGGCCA---CATTGCACTCGCCTAT-CC    344
                     |.|||||..|.|||||||||.|.||.||   ||||    |.|.||.| ||
BPUM_0343        299 ATGGCGGGGTGTTCATTATGCTTGGACATGTCATT----TTGGCTTTACC    344

BSNT_00655___    345 GGGCAGCGCGATCGCATTCTATATCAGCATGGCGCTTATTATTGTCGGAA    394
                     ..||.|.||.|..||..|||.|||.||.||||..||.||||||.|.||.|
BPUM_0343        345 AAGCGGAGCAACAGCGCTCTTTATTAGTATGGGTCTAATTATTATTGGGA    394

BSNT_00655___    395 CAGG-CTTATTAAAACCAAACGTTTCAAGCGTGGTTGGGGATCTTTACAC    443
                     |||| ||| .|.||.|||||||||||||.|.|.||.||.||.||.||..|
BPUM_0343        395 CAGGTCTT-CTGAAGCCAAACGTTTCAAACATTGTGGGCGACCTGTATTC    443

BSNT_00655___    444 GAAAGAAGACCCGCGCCGCGACTCAGGTTTCAGTATTTTCTACATGGGGA    493
                     .|||..||||||.|||.|.||.||.||.||.||||||||.||||||||||
BPUM_0343        444 TAAAACAGACCCACGCAGGGATTCTGGCTTTAGTATTTTTTACATGGGGA    493

BSNT_00655___    494 TTAACCTCGGTGGTTTACTTGCGCCGTTAATTATCGGAACACTCGGAC-A    542
                     |.|||.|.||.|||||..||||.|||||||||.|||||||||||||.| |
BPUM_0343        494 TCAACATGGGCGGTTTTATTGCCCCGTTAATTGTCGGAACACTCGGTCAA    543

BSNT_00655___    543 GAAGTACAACTATCATCTCGGCTTCGGAGCTGCCGCGGTCGGAATGCTTC    592
                     .|||| .||||..||.|||||.|||..|..|||.||.||.||.||||||.
BPUM_0343        544 AAAGT-GAACTTCCACCTCGGATTCTCACTTGCTGCCGTTGGGATGCTTG    592

BSNT_00655___    593 TCGGACTTATCGTATTTGCTTTGA-CAAGAAAGAAA---AACCTCGGGCT    638
                     |.||.||.||...|||||   ||| ||.|||| |||   ||.||.||.||
BPUM_0343        593 TTGGTCTGATTACATTTG---TGATCACGAAA-AAACCGAATCTTGGTCT    638

BSNT_00655___    639 TGCAGGTTCCAATGTGCCGAATCCGCTGTCTAAAAAATCTGCGATTGGCA    688
                     |||.|||.|..|||||.|.|||||.||         |||.||.|.||  |
BPUM_0343        639 TGCCGGTACTTATGTGACAAATCCACT---------ATCAGCTACTG--A    677

BSNT_00655___    689 CCGGAA--------------TCGG------TGTTATCATTGTGGCGATCG    718
                     .||.||              ||||      ..|||.||||||   |.|.|
BPUM_0343        678 ACGCAAGAACTTCAAAATTTTCGGAACATTAATTACCATTGT---GCTTG    724

BSNT_00655___    719 CAG----TGATGATC-TCTG--TACAAACAGGCGTGCTGACGATCAATCG    761
                     |.|    ||.|| || ||.|  |.||||||||.|..||.||.||.||   
BPUM_0343        725 CTGTTTTTGCTG-TCATCGGCATTCAAACAGGTGCACTCACAATTAA---    770

BSNT_00655___    762 TTTTATCGAC----CTTGTAAGTATTCTCGGTATTTTGATTCCTGTCATT    807
                      |||||..||    .||||.|||...||.|||.|..|.|||||..|..|.
BPUM_0343        771 -TTTATTCACTTGGTTTGTCAGTGCCCTTGGTGTGCTCATTCCGATTGTA    819

BSNT_00655___    808 TATTTCATCATCATGT-TTACAAGCAAAAA---------AGCGGA-CAAA    846
                     |||||||||.|||||| ||.| ||.|||||         ||.||| |||.
BPUM_0343        820 TATTTCATCGTCATGTATTTC-AGTAAAAAGACGAGCCCAGTGGAGCAAT    868

BSNT_00655___    847 ACAGAAAAATCCCG-TCTTGCCGCTTACGTTCCTTTGTTTATCAGTGCTG    895
                     .||||        | |||   ||||||..||||.|||||..|...|||.|
BPUM_0343        869 CCAGA--------GTTCT---CGCTTATATTCCATTGTTCCTTGCTGCGG    907

BSNT_00655___    896 TCATGTTCTGGGCCATTCAGGAACAGGGAGCGACCATTCTTGCGGTATAC    945
                     |.|||||||||||.|||||.|||||.||..|.|.||||.|.||...|||.
BPUM_0343        908 TGATGTTCTGGGCGATTCAAGAACAAGGCTCAAACATTTTAGCCACATAT    957

BSNT_00655___    946 GCTGATGAACGCATAAA----ACTTTCATTGGGCGGATTCGA-ACTTCAG    990
                     ||.|||.||||.|.|||    |.||||.|||   ||||  || ||||...
BPUM_0343        958 GCAGATCAACGAACAAACTTGAATTTCCTTG---GGAT--GACACTTGCC   1002

BSNT_00655___    991 TCATCTTGGTTCCAATCATTAAATCCATTGTTTGTCGTCATTTTTGCGCC   1040
                     ||.||.||||||||||||||.||.|||.|.|||.|.||..|.||..|.||
BPUM_0343       1003 TCTTCGTGGTTCCAATCATTGAACCCAATCTTTATTGTGCTATTGTCTCC   1052

BSNT_00655___   1041 AATATTCGCATGGCTCTGGATGAAGCTTGGCAAACGCCAGCCGTCTACAC   1090
                     ..|.||.||.|||.|.|||||.|..|||||.||....|||||||||||.|
BPUM_0343       1053 TGTGTTTGCTTGGTTGTGGATTAGACTTGGAAAGAAACAGCCGTCTACCC   1102

BSNT_00655___   1091 CAGTTAAATTCTCAATCGGAATTATTTTAGCCGGATTGTCATTTATCATT   1140
                     |..||||.||||||.|.||..||.|.||.||.||.||.||.||.|||||.
BPUM_0343       1103 CGATTAAGTTCTCACTTGGCCTTCTGTTTGCAGGGTTATCCTTCATCATC   1152

BSNT_00655___   1141 ATGGT-ATTCCCTG-CTATGCAAG--------GAAAAGAAGCACTCGTAA   1180
                     |||.| ||| |||| |||  ||.|        |||.|    ||||.||.|
BPUM_0343       1153 ATGATCATT-CCTGCCTA--CATGTCTGGTCCGAATA----CACTTGTGA   1195

BSNT_00655___   1181 GCCCGCTTTGGCTTGTTCTCAGCTTCCTGCTTGTCGTGCTTGGAGAGCTG   1230
                     ||||..|.|||||.|||||.||||||.|.|||||||||.|.|||||.||.
BPUM_0343       1196 GCCCATTATGGCTCGTTCTGAGCTTCTTCCTTGTCGTGATCGGAGAACTC   1245

BSNT_00655___   1231 TGCCTGTCTCCAGTCGGTTTATCCGTGACAACGAAACTGGCACCAGCTGC   1280
                     |||.|.||.||.||.||..|.||.|.||||||.|||||||||||.|||||
BPUM_0343       1246 TGCTTATCACCTGTTGGGCTGTCAGCGACAACAAAACTGGCACCTGCTGC   1295

BSNT_00655___   1281 CTTCTCTGCACAGACAATGAGTATGTGGTTTCTGACGAACGCAGCAGCCC   1330
                     .|||||.||.||.||.|||||..|.|||||.||..|.||.|||...||.|
BPUM_0343       1296 TTTCTCAGCGCAAACGATGAGCCTTTGGTTCCTTTCAAATGCAATGGCAC   1345

BSNT_00655___   1331 AAGCGATCAATGCCCAAGTAGCCGGATTGTTTGATAAAATTCCTGAAACA   1380
                     |.||||||||.||.|||||.|.|..|.|||||||||||.|.||.|||||.
BPUM_0343       1346 AGGCGATCAACGCGCAAGTGGTCAAACTGTTTGATAAAGTCCCAGAAACC   1395

BSNT_00655___   1381 ATGTACTTCGGCACCATCGGTTTGATTTCTATCGTTCTTGGCGGCATTCT   1430
                     .|.||.|||||.|.|||.||.|||.||.|.||||||.|..|.||   |.|
BPUM_0343       1396 GTTTATTTCGGTATCATTGGATTGCTTGCCATCGTTTTATGTGG---TGT   1442

BSNT_00655___   1431 CCTGCTGCTCT---CGCCGATGATCAAACGCGCGATGAAAGGGGTCTTAT   1477
                     ..||||.||||   |.||..||||.||....||||||||||||.| |.||
BPUM_0343       1443 GATGCTACTCTTAACACCAGTGATTAAGAAAGCGATGAAAGGGAT-TCAT   1491

BSNT_00655___   1478 AA-   1479
                     .| 
BPUM_0343       1492 TAA   1494


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