Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00719 and BPUM_0386
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:29
# Commandline: needle
# -asequence dna-align/BSNT_00719___ycsK.1.24716.seq
# -bsequence dna-align/BPUM_0386___lipC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00719___ycsK-BPUM_0386___lipC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00719___ycsK-BPUM_0386___lipC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00719___ycsK
# 2: BPUM_0386___lipC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 752
# Identity: 389/752 (51.7%)
# Similarity: 389/752 (51.7%)
# Gaps: 229/752 (30.5%)
# Score: 902.5
#
#
#=======================================
BSNT_00719___ 1 -----ATGATGCTTCGATATACAGCTCTGGGCGATTCCTTGACGACAG-- 43
|.|||.| |||...||..|.||.|||||||| .||||
BPUM_0386___l 1 GTGGGACGATCC-----TATGTTGCAATTGGAGATTCCTT---AACAGTT 42
BSNT_00719___ 44 GGAGAGGCTCCGGGC-TGTTTTCACCCGGCTTCGTCCAGCGTTTTGGGGA 92
||||.|| |||| .|||| .|||||
BPUM_0386___l 43 GGAGTGG----GGGCACGTTT--------------------ATTTGG--- 65
BSNT_00719___ 93 CATGATGGA--AGCTGA----------------CTTGAAAACAAGA---- 120
||.|||| .||||| ||||||||.||||
BPUM_0386___l 66 --TGGTGGATTTGCTGAGCGGTATCAGTGGATGCTTGAAAAAAAGACACA 113
BSNT_00719___ 121 -ACGGCAATAAA------CATATTTGCCAGATCAGGTCTGAATACAGAAG 163
.||.||.|..| ..|||||||.|..|||||..|.|..|||||..
BPUM_0386___l 114 TGCGCCAGTCGAGCTGTCTGTATTTGCAAAGTCAGGGTTAACAACAGATC 163
BSNT_00719___ 164 AGATTTTGGGACTCCTGTCATATCCCTATGTGCAAA------AATG---- 203
|||||| |.|.|| |||.|||| ||||
BPUM_0386___l 164 AGATTT------TACAGT----------TGTTCAAACGATCTAATGTGAG 197
BSNT_00719___ 204 ------TATTCGAGATGCTGATATGATAACGATCACAGGGTGCGGAAACG 247
||||..||..|||.||||.||.||.||||||||.||.||.||.|
BPUM_0386___l 198 ACGTGCTATTGCAGCAGCTAATATCATCACCATCACAGGCTGTGGGAATG 247
BSNT_00719___ 248 ATCT-----CATCGATTCGGTCTTAGC-CTACCAAACCTCTAAGGATGAA 291
|||| .|.|||||| ||| .||..|||....|.|.||||||
BPUM_0386___l 248 ATCTTGTTCAAGCGATTC------AGCAGTATGAAAAGGGTGAAGATGAA 291
BSNT_00719___ 292 ACGATTTTCAGCCG-TGTATCCGCC----CATTGCCATGAGAATTTTGAA 336
|||| |.|.| ||.|..||.| ||||||||.|..|||||....
BPUM_0386___l 292 ACGA-----AACTGCTGCAAGCGACGTTGCATTGCCAAGCAAATTTCAGC 336
BSNT_00719___ 337 AAGATGATTGCCA--AAGTCGCCGAGATTAA---AGGAGAAAATC---CT 378
||||||||| || ||.||||..||||.|| ||||.|.||.| ||
BPUM_0386___l 337 AAGATGATT--CAAGAAATCGCTCAGATCAAAAGAGGACAGAAGCAGTCT 384
BSNT_00719___ 379 TCCCCGTACGCCATT-CGTGTGT----TCAACTTATACAATCCGTTTCCC 423
| ||| |||||.| |.||.|||||.|||||.|||||.
BPUM_0386___l 385 T-----------ATTGCGTGTATCTCATGAATTTATATAATCCTTTTCCG 423
BSNT_00719___ 424 GAAATTGATATCGCCGGCAAATGG----------------ATCA-CTTCG 456
.||||...|||.|||||...|||| |||| |||||
BPUM_0386___l 424 CAAATACCTATAGCCGGTCGATGGCTTCAGCAATACAATCATCAGCTTCG 473
BSNT_00719___ 457 TTTAATTCACATTTAGAAACACTTGCATCAGCACCCCATGTCAAAATCGC 506
.| |.|||||..||...||.|||||..||.|||.
BPUM_0386___l 474 CT-----------------CGCTTGCTGCAAATCCGCATGTAGAAGTCGT 506
BSNT_00719___ 507 GGATGCCTATA----GCATCTTCAAAGGCAAAGAACAGGAATATCTGTCC 552
||||| |.|| || .||..||||..|.|||||.||.||..|.||.
BPUM_0386___l 507 GGATG--TGTACCGGGC--GTTTGAAGGACATGAACATGAGTACTTATCG 552
BSNT_00719___ 553 TTTGACGGTGTC-----CATCCGAA-CAGCAAAGGCTATCAAGCGATGGC 596
.|||| || |||||||| || .||.||.|||.||||.|||||
BPUM_0386___l 553 ATTGA-----TCAATTTCATCCGAATCA-TAAGGGATATGAAGCAATGGC 596
BSNT_00719___ 597 TGAA-----GCCGTTC-ACAAGCTAGGCTATAAAGAATTATCAGTTTCAT 640
..|| | .||| ||||.| ||.||||.|..|.|.|
BPUM_0386___l 597 AAAAATATTG--TTTCAACAATC----CTGTAAACAGCTGTAA------- 633
BSNT_00719___ 641 AG 642
BPUM_0386___l 633 -- 633
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