Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05020 and BPUM_0408

See Amino acid alignment / Visit BSNT_05020 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:45
# Commandline: needle
#    -asequence dna-align/BSNT_05020___yqcG.1.24716.seq
#    -bsequence dna-align/BPUM_0408___yqcG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05020___yqcG-BPUM_0408___yqcG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05020___yqcG-BPUM_0408___yqcG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05020___yqcG
# 2: BPUM_0408___yqcG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1797
# Identity:     990/1797 (55.1%)
# Similarity:   990/1797 (55.1%)
# Gaps:         456/1797 (25.4%)
# Score: 2289.0
# 
#
#=======================================

BSNT_05020___      1 ATGAAAGTATTTGAAGCCAAAACACTGCTTTCCGAAGCTGAAAACCGTGC     50
                     |||.|.|.|    |.|.|||||||||.|      .||  |||..|||.|.
BPUM_0408___y      1 ATGGACGCA----AGGTCAAAACACTAC------CAG--GAACTCCGCGA     38

BSNT_05020___     51 AAAAGAATACAAAGATTTAAAAAGTAAAATGATCAAATTAAAGAAAGCAT    100
                     |                        .|||||.||.|.|||||.|||||||
BPUM_0408___y     39 A------------------------CAAATGGTCGATTTAAAAAAAGCAT     64

BSNT_05020___    101 TCAAAGCTGTCGCTGATTTAGATGATAGTGAATTTTCAGGTAAAGGTGCA    150
                     |..|||.|||.||..|..|.|.|||   |||.||..|.||.||||||||.
BPUM_0408___y     65 TACAAGGTGTTGCCAACCTCGGTGA---TGACTTCACTGGGAAAGGTGCC    111

BSNT_05020___    151 AATAACATCAAATCATTTTATGAAGATCAGGCCGGCATTGCTGACCAGTG    200
                     .|||||||.|||...||.|||.||||.|.|||.||.|.||..|||..|  
BPUM_0408___y    112 GATAACATTAAAAGTTTCTATAAAGAGCTGGCTGGAAATGTAGACATG--    159

BSNT_05020___    201 GATTGATC----TAATTGAGATGAAAATATCTTTT--TTAACGAGTATTC    244
                       ||.|||    |.||.||.|.|.|||.|.|.|||  |.||  .||.||.
BPUM_0408___y    160 --TTTATCAGCTTCATCGATAAGCAAAAAGCCTTTCATGAA--GGTGTTT    205

BSNT_05020___    245 CTGGTATCTTGGAAGACTCCAGCTTAT-CA------------GATGCCTA    281
                     ||||          |||.|.||.|.|| ||            |||.|||.
BPUM_0408___y    206 CTGG----------GACACTAGATGATACAAACTTTGGCGGCGATACCTT    245

BSNT_05020___    282 CATAGAAGAATCCTTCCTAGA----GC-------ATGAGTTGGC--CAAT    318
                     ..||||||||..|||..||||    ||       |||    |||  ||| 
BPUM_0408___y    246 TGTAGAAGAACACTTTTTAGACAACGCTGTACATATG----GGCATCAA-    290

BSNT_05020___    319 GCTAATTCTAAAT--CAAAATCCATCATGTCA--GAACAGAAAAAGGCCA    364
                              ||||  ||||| .|||  |||.|  ||.||.||||||||..
BPUM_0408___y    291 ---------AAATGCCAAAA-GCAT--TGTAAAGGATCAAAAAAAGGCGC    328

BSNT_05020___    365 TCAAAGACATCTTAAATGAAATACACGATGTCCTTCCCTTAGATGTTTTT    414
                     |.|||..|||.||..|.||.||..||||..|||||.|..||||.||.|||
BPUM_0408___y    329 TTAAAACCATTTTTCAAGACATCGACGACCTCCTTTCACTAGAAGTATTT    378

BSNT_05020___    415 TCAACGGAAGATTTTAAAACTGAGTTATCTTCTGCTGAGAAAA-------    457
                              |||..|.||||        ||| ||.|||.||||       
BPUM_0408___y    379 ---------GATAGTCAAAC--------CTT-TGATGAAAAAATTGCAGA    410

BSNT_05020___    458 -----------AACGAAAAAATACAGTCGAGAAAA----TAAGTGAAGTC    492
                                |.||||||||.|||||    ||||    ||||.||..|.
BPUM_0408___y    411 TGCGGAAGACGAGCGAAAAAAGACAGT----AAAAGATCTAAGAGAGCTT    456

BSNT_05020___    493 GATGAGGACCTAACGTCA----GAATACGCCTTGTCAGAAGCAAATGAAC    538
                     |||.|..|..|||    |    |||||.||.|||||||||.|..|..|.|
BPUM_0408___y    457 GATCAAAATTTAA----AAGATGAATATGCTTTGTCAGAAACGGAGCAGC    502

BSNT_05020___    539 AAATGATTCA--GGCTGAT--TACCAAGCACTCATAAATGCAACA-----    579
                     ||  |.|.||  |||  ||  |||..||.|.|.||.|||||.|||     
BPUM_0408___y    503 AA--GCTACAATGGC--ATTGTACGCAGAAATGATGAATGCCACAAATGA    548

BSNT_05020___    580 -GCAAAAGGCAAGAGTGCCTCTCCTATCCACTATAACGCAAAGGCTTATA    628
                      |.|||||   .||.|   |||||.||..|.|.|.||...||.||.|||.
BPUM_0408___y    549 TGGAAAAG---CGATT---TCTCCAATGAATTTTGACAAGAAAGCGTATC    592

BSNT_05020___    629 GAGACAGTGAAATTCACAAGATGACTGAG--------GATGTAAAAAAAC    670
                     .|.|.||.|||||..||||        ||        |||.|..||||.|
BPUM_0408___y    593 AAAATAGCGAAATCTACAA--------AGCAAAAAGCGATATTGAAAAGC    634

BSNT_05020___    671 AATCGACTGATTATATCGCCTTT---AAAGATCAGCAGG----CCGAACA    713
                     ||.|..|.||.|||.||..|.||   |||||.||.||||    |||    
BPUM_0408___y    635 AAACTTCCGAATATCTCAACATTAAAAAAGAACAACAGGAAGCCCG----    680

BSNT_05020___    714 AAGAAGGCTAGCAAAAGAACAGGAAGAGCTAGCGAACAGGCCATGGTACG    763
                      |||  |.|.|||||||||||.||||..||.||.||..|.||.|||||.|
BPUM_0408___y    681 -AGA--GATTGCAAAAGAACAAGAAGCACTCGCAAATCGTCCTTGGTATG    727

BSNT_05020___    764 AAAA-------------GACGTGGGATGTTGTTTGTAATTTTACAGGAGA    800
                     ||||             |.|| ||.||.|.||...|.|..|.|||||.| 
BPUM_0408___y    728 AAAAAGCCCTCGATTATGGCG-GGAATATCGTGAATGAACTGACAGGCG-    775

BSNT_05020___    801 AGTCTCTGGATATTATGATTATAAAAGAGCCGCTGATGGAGTTGATCCTG    850
                           ||     .|.|||...|||.|.|||||....||.|||||.||..
BPUM_0408___y    776 ------TG-----AACGATGCAAAACGCGCCGCAACAGGCGTTGACCCGA    814

BSNT_05020___    851 TTACCGGCGAA-AAGTTGACAGAGGGCCAACGTGTAGCAGCTGGAGCGAT    899
                     |.||.|||||| ||.|| ||.|..||.||.||.||.||.||.||.|..||
BPUM_0408___y    815 TCACAGGCGAAGAACTT-ACCGCAGGACAGCGCGTCGCCGCAGGCGGCAT    863

BSNT_05020___    900 GGCTGCGGCAGGTTATGTCCCGATTGTTGGATGGGCTGGAAAATTAGCA-    948
                     |||.||.|||||.|||.||||.||.||.||.|||||.||     ..||| 
BPUM_0408___y    864 GGCAGCCGCAGGATATATCCCAATCGTCGGCTGGGCAGG-----GCGCAT    908

BSNT_05020___    949 ----AAAGGCGGAAAAGCTGTTTATTCAACCAGTAAAG-CACTCTACA-C    992
                         |||||.||||||||.||.|||..|||.|...||| ||| || || |
BPUM_0408___y    909 TTTCAAAGGGGGAAAAGCCGTCTATAAAACGACCCAAGCCAC-CT-CAGC    956

BSNT_05020___    993 AGCAGACAAAGCACTTGATGTCTACAAAACGCCACAGACATTCC----AT   1038
                     .||||.|||||||.|.||..|.|||||.||..|.|| |.|.|||    |.
BPUM_0408___y    957 CGCAGTCAAAGCAGTCGACATTTACAAGACATCGCA-AAAATCCTTTGAC   1005

BSNT_05020___   1039 GCTCTTCAAAA-TTCGAGTAAAGGTCTT-TATGGGCTTGCTTCTGCGAAC   1086
                     || |||.|||| .|||...||||| ||| |||||.||..||.||.|.|||
BPUM_0408___y   1006 GC-CTTAAAAACATCGCAAAAAGG-CTTATATGGACTCACTGCTACAAAC   1053

BSNT_05020___   1087 GGTTTTAGCGAAGCTATAACAGGCCGCGACATGTTTGGCAATAAGATTTC   1136
                     ||.||.||||||||.||.|||||..|.|||||||||||.||||||||.||
BPUM_0408___y   1054 GGCTTCAGCGAAGCAATTACAGGTAGAGACATGTTTGGGAATAAGATCTC   1103

BSNT_05020___   1137 AAAAGAACAGCAGCATAAC-AGTATAAATGCAGCACTTG--CTGTTTTCA   1183
                     .||||||||.|||.| |.| |||||.|||||.||.||.|  .||.|||  
BPUM_0408___y   1104 GAAAGAACAACAGGA-AGCGAGTATGAATGCGGCGCTGGGAATGCTTT--   1150

BSNT_05020___   1184 TGCCATTTGGTGCAAAAGGTTTTTCCGGAAAAACGGGCCTTAAAGCTTCA   1233
                     |.||.|||||.||.|||||.|||...||.||.|.|||..||||       
BPUM_0408___y   1151 TACCGTTTGGGGCGAAAGGGTTTCATGGGAAGATGGGTGTTAA-------   1193

BSNT_05020___   1234 TCATCAACTGAA-ACC---GTAACTCAAG-TTACAGTTAGTAGAAAA---   1275
                              ||| |||   | ||||.||| .|.||||| .|||||||   
BPUM_0408___y   1194 ---------GAATACCAGAG-AACTTAAGCATCCAGTT-TTAGAAAATCC   1232

BSNT_05020___   1276 ----------GGGGCTTTTAAAGA-------------AGC-GAAAAGAGA   1301
                               .|.|||||.|||||             ||| ..||.||  
BPUM_0408___y   1233 ACGAGCAGGTAGTGCTTTGAAAGATGATTTTTATCATAGCTTTAATGA--   1280

BSNT_05020___   1302 TGCCGGTATACCACGTGCTCAACAAC----CAGAATCAATC-AATCG---   1343
                           ||||       .|..|||||    ||| .|||.|| ||..|   
BPUM_0408___y   1281 ------TATA-------ATTGACAACTATGCAG-TTCATTCTAAGAGATT   1316

BSNT_05020___   1344 TG----------TAGAAATG--CGTACTGCTCC------TCA---CGAAG   1372
                     ||          ||||||.|  |.||..|.|.|      |||   .||.|
BPUM_0408___y   1317 TGATTTACCAAATAGAAAAGGCCATATGGATTCGTTGTATCAAATAGAGG   1366

BSNT_05020___   1373 GCGGTC-GTG--TAATTA--AAGATAAAAATGGTAAAA-TCATTAGGACG   1416
                     ||  || |||  |||.||  ||...|||.|| |||||| |.|  ||.|| 
BPUM_0408___y   1367 GC--TCAGTGGTTAAGTACGAAACGAAATAT-GTAAAAGTAA--AGAAC-   1410

BSNT_05020___   1417 AGAGAATACACCTTCACT--AACAACAAAGGCGAAAAAATTATTATACAA   1464
                         |||.|.|||..|.|  .||     ||.|||||.||.||      ||
BPUM_0408___y   1411 ----AATGCCCCTGAAATGGTAC-----AGTCGAAAGAAATA------AA   1445

BSNT_05020___   1465 GATCATAGCGCTG---GACATGAAAAAGGTGGTCAAGGTCCGCACTTTAA   1511
                     ||  ||.||| ||   || |||     ||||||  ||.||| .||   ||
BPUM_0408___y   1446 GA--ATGGCG-TGTTTGA-ATG-----GGTGGT--AGATCC-AAC---AA   1480

BSNT_05020___   1512 CG------TTAGACCAATTGA----TAATA-CTCGAACAGGAAAAGTCCC   1550
                     ||      .|| |||.||.||    |.||| ||.|   .||.||||    
BPUM_0408___y   1481 CGAATACAGTA-ACCCATAGAACTTTTATACCTGG---TGGCAAAG----   1522

BSNT_05020___   1551 TGGCACAAAAGAACATTATCCTTTTAATAAATAA-------------   1584
                     ||.||..|||               |||||||.|             
BPUM_0408___y   1523 TGACAGGAAA---------------AATAAATCAATGGGAGAGATAG   1554


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