Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00021 and BPUM_0503

See Amino acid alignment / Visit BSNT_00021 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:57
# Commandline: needle
#    -asequence dna-align/BSNT_00021___yaaC.1.24716.seq
#    -bsequence dna-align/BPUM_0503___yaaC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00021___yaaC-BPUM_0503___yaaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00021___yaaC-BPUM_0503___yaaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00021___yaaC
# 2: BPUM_0503___yaaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1073
# Identity:     628/1073 (58.5%)
# Similarity:   628/1073 (58.5%)
# Gaps:         229/1073 (21.3%)
# Score: 1691.5
# 
#
#=======================================

BSNT_00021___      1 ATGACATA--TCATGAGTGGAAAGACTTAGCGCTATTTTACTCCGTTGAA     48
                     |||| |.|  |||.|| |||||.||.|||...|..||||||||..|.|||
BPUM_0503___y      1 ATGA-AAAGTTCAGGA-TGGAAGGATTTAAAACGTTTTTACTCACTCGAA     48

BSNT_00021___     49 TCAACCCAGAAATTTCTA---GAAAAGGTTTATATCTTAAACG--GTATT     93
                     .|..||||.||.||||||   .||.|     ||||...|||||  |.|||
BPUM_0503___y     49 ACTTCCCAAAAGTTTCTATATCAACA-----ATATGAGAAACGGAGCATT     93

BSNT_00021___     94 GACGATGCGAAAAAAAACTCTTTTAAAAACAGTGAACGGTTTATTTATTT    143
                     .|.|||||.||..|..|..|.|.|||||||.|||||||||||||||||||
BPUM_0503___y     94 CAAGATGCAAACCAGCAAGCCTATAAAAACTGTGAACGGTTTATTTATTT    143

BSNT_00021___    144 CTTAAAGCATGCCGAATCGTTTTATAAACAAGCCGCATAT-TCTCCCTTA    192
                     .||||||||||...|..|.||.|||.||||.||.|| ||| .||||..|.
BPUM_0503___y    144 TTTAAAGCATGGTCATACATTCTATGAACAGGCAGC-TATCGCTCCACTC    192

BSNT_00021___    193 GAAATCAAACCGATTCTTTTATTTTATGGAATGGCACAGCTTATCAAAGC    242
                     |||.|.||.||.|||.|.|||||||||||||||||.|||.|..|.||.||
BPUM_0503___y    193 GAACTGAAGCCCATTTTATTATTTTATGGAATGGCTCAGTTGCTAAAGGC    242

BSNT_00021___    243 ATGCTTAATTACACGTGATCCTCATTATCCAAGCCATACATCAGTACTGG    292
                     |||.|||.|.|||..|||||||.|.|||||....||.||.||.||..|||
BPUM_0503___y    243 ATGTTTACTGACAGTTGATCCTTACTATCCTTCTCAAACTTCTGTTTTGG    292

BSNT_00021___    293 CACATGGCGTAACAACAAGAAAACGAAAGAAACAAAATTATTGTTTTAGC    342
                     ||||.||.||||||.|.|||||..|||||||.||..|.||..|||||||.
BPUM_0503___y    293 CACACGGTGTAACATCGAGAAAGAGAAAGAAGCAGCACTACCGTTTTAGT    342

BSNT_00021___    343 GATGATGAAGTGAAAATACAACGAAATGGACTATGCGTGCATTTTATGAA    392
                     .|.||||||||||||||.||.|||||||||||||||.|||||.|..|.||
BPUM_0503___y    343 AAAGATGAAGTGAAAATTCAGCGAAATGGACTATGCATGCATGTGTTAAA    392

BSNT_00021___    393 ACATTTATT---------CGGACAATCGGATATAGTAGATGAACGGTATA    433
                     .|||.||||         .||||         |.|.||||||.||.|.||
BPUM_0503___y    393 GCATCTATTTCATTTAAATGGAC---------TTGAAGATGAGCGATTTA    433

BSNT_00021___    434 CCATGAAAAAATTATTAATGGCCATTC-CAGA-ACTTAGCGAT-----AT    476
                     |.|||        |||.|...||.||| .||| ||.| |.|||     ||
BPUM_0503___y    434 CGATG--------ATTCACCTCCTTTCAAAGATACCT-GAGATGAGTCAT    474

BSNT_00021___    477 TTTCT--ACTTTCAGCAGAAAGAA-----CGATTTATGACA------AAA    513
                     .||||  |.|||||    ||||.|     |       ||||      |||
BPUM_0503___y    475 ATTCTGGAGTTTCA----AAAGCAGCCCTC-------GACATTAGTTAAA    513

BSNT_00021___    514 GTTGAGAAGGATAA--GAACGA-AATTTTTGTACCGGAGGAAG-TAGTAA    559
                     ||.||.||.||.||  |.|.|| .|||            .||| |..||.
BPUM_0503___y    514 GTAGAAAAAGACAATGGCATGATGATT------------CAAGATCATAT    551

BSNT_00021___    560 TCAA-----TTACAAAATGTCTGATTCAAGGTTTGCTGAATACAT---GT    601
                     ||.|     |||.||.|||||||.|..|.|.|||..||||||..|   ||
BPUM_0503___y    552 TCCATTGCTTTATAACATGTCTGCTGAACGTTTTATTGAATATTTTGAGT    601

BSNT_00021___    602 CCCATCATTATCAA--TGG--TCTTTTACAAA--------AAAAAATGAA    639
                     .||| ||    |||  |||  .|||..|||.|        ||||||    
BPUM_0503___y    602 TCCA-CA----CAAGTTGGAAACTTAAACAGAGAGAAGCGAAAAAA----    642

BSNT_00021___    640 CACGGGCTGCTGTTCGAAATTTCACCACAAGACAAGGAGCCATGGACATC    689
                           |||..|||.||..|.||.|.|.||||.||    ||     ||.|
BPUM_0503___y    643 ------CTGGCGTTTGATGTGTCTCTAGAAGAAAA----CC-----CAGC    677

BSNT_00021___    690 G------AC-CAGCTT-ATTGTTTGACATGGAAAAGAACCAATATTATAT    731
                     |      || ||.||| ||  |.|||..|.|||..|||.||||..|||||
BPUM_0503___y    678 GTTTGCTACTCATCTTCAT--TATGATTTAGAAGCGAATCAATGGTATAT    725

BSNT_00021___    732 CCCTTCTCAAA---GGGAGCAATTTCTGAGGCTTCCCGAAATGACAATTC    778
                     .||.||   ||   |.||...||||.||.||.||||.||.||.|..|..|
BPUM_0503___y    726 TCCGTC---AACGCGTGATTCATTTTTGGGGATTCCTGAGATCATCAGCC    772

BSNT_00021___    779 ATTATTTGATT-TTGTACAACGTTGGGATGATTGCAAGGTATGAAACAGA    827
                     ||||.|| ||| .||||.|||.|..|.||||||||..|.|||||||||||
BPUM_0503___y    773 ATTACTT-ATTGATGTATAACCTCAGTATGATTGCCCGCTATGAAACAGA    821

BSNT_00021___    828 ATGGTGGTATGAGTTATTAACACAGCATATAAGTGATGACTACGT-----    872
                     |||||||||.||..|..||.|.||..|.||.||||||||.|||||     
BPUM_0503___y    822 ATGGTGGTACGAACTGCTATCTCAATACATTAGTGATGATTACGTCATGA    871

BSNT_00021___    873 ------GTTA-------ATT----------------CAGCA--------G    885
                           |.||       |||                |||||        |
BPUM_0503___y    872 TCGAACGCTACATGGAGATTGCTGAAGAGAAGTTCCCAGCATATATCATG    921

BSNT_00021___    886 TTTTTATTAGTAACAGAAAAGAAATTCCCTAAATACGCTTCACAGTTTCT    935
                     .|..|||||| ||.|.||||.|||      |||.||      |||||.| 
BPUM_0503___y    922 ATGCTATTAG-AAGAAAAAACAAA------AAAGAC------CAGTTCC-    957

BSNT_00021___    936 TCTTCATTTTTAA----------    948
                                ||          
BPUM_0503___y    958 -----------AAATGGAACTGA    969


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