Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01037 and BPUM_0526

See Amino acid alignment / Visit BSNT_01037 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:41
# Commandline: needle
#    -asequence dna-align/BSNT_01037___ydiF.1.24716.seq
#    -bsequence dna-align/BPUM_0526___ydiF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01037___ydiF-BPUM_0526___ydiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01037___ydiF-BPUM_0526___ydiF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01037___ydiF
# 2: BPUM_0526___ydiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2010
# Identity:    1392/2010 (69.3%)
# Similarity:  1392/2010 (69.3%)
# Gaps:         168/2010 ( 8.4%)
# Score: 4525.0
# 
#
#=======================================

BSNT_01037___      1 ATGATGATCTTACAAATTAATCAGCTGTCCAAATCGTTTGGTGCTGATAC     50
                     ||||||||..|||||.|.||||||||||||||||||||||||||||||||
BPUM_0526___y      1 ATGATGATTCTACAAGTGAATCAGCTGTCCAAATCGTTTGGTGCTGATAC     50

BSNT_01037___     51 TATTTTAAACAATATAAAGCTGGAAGTCAGAAATC--GTGATCGCATCGC     98
                     ..||||||..||||||||..|||||||  ||||.|  |.|||||.||.||
BPUM_0526___y     51 CGTTTTAACGAATATAAAATTGGAAGT--GAAAGCAAGGGATCGGATTGC     98

BSNT_01037___     99 CATTGTAGGAAGAAATGGCGCCGGAAAATCCACGCTCCTTAAAATTATCG    148
                     |||||||||..|.||.|||||.||.||||||||.||..|.|||||.||.|
BPUM_0526___y     99 CATTGTAGGTCGTAACGGCGCAGGCAAATCCACCCTTTTGAAAATCATTG    148

BSNT_01037___    149 CAGGCCAGCTTTCGTATGAGAAGGGCGAAATTATTAAACCGAAAGA--TA    196
                     |.||.||..|.||.||.|||.|.||.||.||.||.|||||||||||  ||
BPUM_0526___y    149 CCGGTCAATTGTCTTACGAGCAAGGTGAGATCATCAAACCGAAAGACCTA    198

BSNT_01037___    197 TTACAATGGGATATCTCGCCCAGCATACTGGCTTGGATTCTAAGCTTACC    246
                     |  |.||.||.|||.|.||.||||||||.|...||...||||..|.|||.
BPUM_0526___y    199 T--CGATCGGCTATTTAGCACAGCATACCGATGTGACGTCTACACGTACG    246

BSNT_01037___    247 ATAAAAGAAGAGCTGCTGACTGTTTTTGACCACTTAAAAGCAATGGAAAA    296
                     .|||||||.||..|..|..|.||||||||.||.||||||..|||||||.|
BPUM_0526___y    247 TTAAAAGACGAATTATTATCGGTTTTTGATCATTTAAAAAAAATGGAACA    296

BSNT_01037___    297 GGAAATGCGGGCTATGGAAGAAAAAATGG------CGGCAGCTGCCCCG-    339
                     .||.|||.|..|.||.||.||.|||||||      |..|||.||  ||| 
BPUM_0526___y    297 AGAGATGAGAACCATCGAGGAGAAAATGGCTTCTTCCACAGGTG--CCGA    344

BSNT_01037___    340 GGTGAATTAGAAAGCATCATGAAAACCTACGACCGCCTTCAGCAGGAATT    389
                     |.||.|||     .|.|.|||||||||||||||.|.||.|||||||||||
BPUM_0526___y    345 GCTGGATT-----CCCTTATGAAAACCTACGACAGACTACAGCAGGAATT    389

BSNT_01037___    390 CAAAGATAAAGGCGGCTATCAATATGAAGCGGATGTTAGATCTGTGCTGC    439
                     .||||||.||||||||||||||||.|||||.||.||..|.||..|.||.|
BPUM_0526___y    390 TAAAGATCAAGGCGGCTATCAATACGAAGCAGACGTCCGCTCCATTCTTC    439

BSNT_01037___    440 ATGGTCTCGGCTTCAGCCATTTTGACGATTCTACACAGGTTCAAAGCCTC    489
                     ||||.||||||||.||.||.|||||..||...|||...||||||..|.|.
BPUM_0526___y    440 ATGGACTCGGCTTTAGTCACTTTGAAAATGAGACAACCGTTCAATCCTTA    489

BSNT_01037___    490 AGCGGAGGCCAGAAAACAAGACTGGCTTTAGGTAAGCTTCTGTTAA----    535
                     ||.||.||.||||||||..|.||.||..|.||.|||||..|.||||    
BPUM_0526___y    490 AGTGGTGGTCAGAAAACCCGTCTAGCGCTTGGAAAGCTCTTATTAATGAA    539

BSNT_01037___    536 --CACAGC-CTGATTTGCTCATTCTCGATGAGCCGACAAACCATCTGGAT    582
                       ||||.| ||       |.|||||.||.||||||||.||||||.|.|||
BPUM_0526___y    540 ACCACAACTCT-------TAATTCTGGACGAGCCGACCAACCATTTAGAT    582

BSNT_01037___    583 ATTGATACGCTTA-CCTGGCTTGAGCATTTTTTGCAAGGCTATTCAGGCG    631
                     |||||||| |||| |.|||||.|||||.|.|||||||...|||.||||||
BPUM_0526___y    583 ATTGATAC-CTTATCATGGCTGGAGCAGTATTTGCAAAATTATACAGGCG    631

BSNT_01037___    632 CCATCCTCATCGTATCGCATGACCGCTACTTTTTGGACAAAGTAGTAAAC    681
                     |.||.||.|||||.||.|||||.||.|||||.||.||||||||.||.|||
BPUM_0526___y    632 CTATTCTGATCGTGTCCCATGATCGATACTTCTTAGACAAAGTGGTGAAC    681

BSNT_01037___    682 CAGGTATACGAGGTATCAAGAGCAGAAAGCAAAAAGTAT-CACGGCAACT    730
                     ||.|||||.||.||.||||||.|.|..|..|||||||.| || |||||||
BPUM_0526___y    682 CATGTATATGAAGTTTCAAGAACGGCTATGAAAAAGTTTGCA-GGCAACT    730

BSNT_01037___    731 ACAGCGCTTATCTCGATCAAAAAGCCGCGCA--------GTATGAAAAAG    772
                     |.||....|||||.||||..|||||.|.|||        ||        |
BPUM_0526___y    731 ATAGTAAGTATCTTGATCTGAAAGCTGAGCAACTAGAGCGT--------G    772

BSNT_01037___    773 ATCTGAAAATGTATGAAAAGCAGCAGGACGAAATTGCAAAGCTGCAGGAC    822
                     ||.||||..|.||.|||||||||||.||.|||||..|||||||.||.||.
BPUM_0526___y    773 ATATGAAGCTTTACGAAAAGCAGCAAGAAGAAATCTCAAAGCTTCAAGAT    822

BSNT_01037___    823 TTCGTAGACCGAAATCTGGCGAGAGCCTCTACCACCAAAAGGGCGCAAAG    872
                     ||||||||.||.|||||.||.||||||||.|||||  ||||.||||..||
BPUM_0526___y    823 TTCGTAGATCGCAATCTAGCAAGAGCCTCGACCAC--AAAGCGCGCCCAG    870

BSNT_01037___    873 CCGCAGA---AAGCAGCTGGAGCGAATGGAAGTCATGTCA---AAACCGC    916
                      .|||||   ||.||||||||.||.|||||  ||.| |.|   ||.||..
BPUM_0526___y    871 -AGCAGACGCAAACAGCTGGAACGGATGGA--TCGT-TTAGATAAGCCAT    916

BSNT_01037___    917 TTGGCGATGAAAAATCCGCAAACTTTCATTTTGATATTACAAAACAGAGC    966
                     |.||.|||||||||||||||||||||||||||||||||||.|.|||.|||
BPUM_0526___y    917 TAGGTGATGAAAAATCCGCAAACTTTCATTTTGATATTACGAGACAAAGC    966

BSNT_01037___    967 GGAAATGAAGTCCTTCGTGTTCATGATCTC-ACAATCAGCTATG----AA   1011
                     ||.|||||.||.||....||.||||||||| |||.|| |.||||    ||
BPUM_0526___y    967 GGCAATGACGTGCTGAAGGTACATGATCTCGACATTC-GTTATGATGAAA   1015

BSNT_01037___   1012 AACCAGCCGCCGCTTTTAACAGAAGTGTCATTCAT----GCTCACAAGAG   1057
                     ||..|    ||||||.||.|    .|.||.|||||    |.|||.|.|.|
BPUM_0526___y   1016 AAATA----CCGCTTCTATC----CTCTCTTTCATTTCAGATCAAACGCG   1057

BSNT_01037___   1058 GAGAAAGCGCAGCGCTTGTCGGCCCTAACGGAATTGGTAAATCGACATTG   1107
                     ..||.||||..||.||..|.||.|||||.||.||.||.|||||.||..|.
BPUM_0526___y   1058 AGGATAGCGTGGCACTCATTGGTCCTAATGGGATCGGGAAATCAACCCTT   1107

BSNT_01037___   1108 CTGAAAACATTAATAGACACCCTAAAACCAGATCAAGGAACG--ATCTCA   1155
                     .|.|||||.||||...||||..||||.||.|...||||  ||  |||.|.
BPUM_0526___y   1108 TTAAAAACGTTAACGAACACATTAAAGCCTGCAAAAGG--CGACATCACC   1155

BSNT_01037___   1156 TACGGCTCAAATGTCAGTGTCGGCTATTATGATCAGGAACAGGCAGAGCT   1205
                     |..||.||..||||||...|.|||||.|||||.||.|||||.||..|.||
BPUM_0526___y   1156 TTTGGATCTCATGTCACCATTGGCTACTATGACCAAGAACAAGCCAAACT   1205

BSNT_01037___   1206 GACTTCCTCTAAACGTGTCCTTGATGAGCTGTGGGACGAGTACCCCGGGC   1255
                     |||.|||||.|||...||.||..|||||||.|||||.||.||.|     |
BPUM_0526___y   1206 GACATCCTCCAAAAAAGTGCTCAATGAGCTTTGGGATGACTATC-----C   1250

BSNT_01037___   1256 TCCCA-----GAAAAAGAAATCAGAACGTGTCTCGGAAATTTCTTATTCT   1300
                     ||.||     ||||||||.||..|.||.|||.|.||.||.|||.|.||.|
BPUM_0526___y   1251 TCACATGAATGAAAAAGACATTCGGACATGTTTAGGGAACTTCCTCTTTT   1300

BSNT_01037___   1301 CCGGAGATGATGTGCTGAAA-CCAGTTCATTCACTGAGCGGAGGCGAAAA   1349
                     ||||.||.||.|| ||.||| ||.||||||.||.|.|||||.||.|||||
BPUM_0526___y   1301 CCGGTGACGACGT-CTTAAAGCCCGTTCATGCATTAAGCGGTGGAGAAAA   1349

BSNT_01037___   1350 AGCAAGATTGGCTCTAGCTAAGCTGATGCTTCAAAAAGCCAACTTTCTCA   1399
                     |||..|..|.||.||.||.|||||||||||.|||||||||||.||.||.|
BPUM_0526___y   1350 AGCGCGCCTTGCCCTGGCAAAGCTGATGCTCCAAAAAGCCAATTTCCTGA   1399

BSNT_01037___   1400 TCCTTGATGAACCGACTAACCATCTGGATTTAGACAGCAAAGAAGTTCTC   1449
                     |.|||||||||||.||.||||||.||||.|||||.||.||.|||.||.|.
BPUM_0526___y   1400 TACTTGATGAACCTACGAACCATTTGGACTTAGATAGTAAGGAAATTTTA   1449

BSNT_01037___   1450 GAAAACGCGCTGATTGATTATCCAGGCACACTGTTATTTGTCTCACATGA   1499
                     |||||.|||||.|||||||||||.||.||..|.|||||||||||.|||||
BPUM_0526___y   1450 GAAAATGCGCTCATTGATTATCCGGGAACTATCTTATTTGTCTCGCATGA   1499

BSNT_01037___   1500 CAGATATTTTATTAACAGAATCGCCACAAGAGTATTGGAGCTTT---CTT   1546
                     |.|.||||||||.|||.|..|.||.||.|.||||||.|||||.|   ||.
BPUM_0526___y   1500 CCGTTATTTTATCAACCGCCTAGCAACGAAAGTATTCGAGCTGTCACCTA   1549

BSNT_01037___   1547 CA-AGCCATATAGAGGAGTATCTGGGAGATTACGATTATTATAC----AG   1591
                     || |..||   ||| ||||||||.||.||.||.||.||.||| |    |.
BPUM_0526___y   1550 CAGAAACA---AGA-GAGTATCTCGGTGACTATGACTACTAT-CTTGAAA   1594

BSNT_01037___   1592 AGAAAAA--AACA--GAGCAGCTTGA----ATTGGAGAAAATAAATCAGC   1633
                     |||||.|  ||||  .|| |||||||    |||..|||||||.|..| ||
BPUM_0526___y   1595 AGAAAGATGAACAATTAG-AGCTTGAGGCGATTCAAGAAAATGAGGC-GC   1642

BSNT_01037___   1634 ---AAGAAGAAACTGAAAAAACGCCAGCTACTGTGAAGTCTGACTCCAAA   1680
                        ||.||.||.|.|.|||   |||||     .||||     ||..||||
BPUM_0526___y   1643 TTAAAAAACAAGCAGCAAA---GCCAG-----TTGAA-----ACAGCAAA   1679

BSNT_01037___   1681 -CGTTCCTACGAGGAAGAAAAAGAATGGAAAAAGAAAGAGCGCCAACGAC   1729
                      |.|||.||.|..||||||||||||...|||||||||||..|.|||...|
BPUM_0526___y   1680 GCTTTCTTATGCAGAAGAAAAAGAACTAAAAAAGAAAGAAAGACAAAAGC   1729

BSNT_01037___   1730 TCCGTCGGATTGAAGAAATTGAAACCACCG--TTCAAACCATTGAGGAGA   1777
                     ..|||.|.||.||.|||||||||  .|.||  ||...|.||||||.|.||
BPUM_0526___y   1730 AGCGTAGAATCGAGGAAATTGAA--GAACGGATTGCTATCATTGAAGCGA   1777

BSNT_01037___   1778 ACATCAGCCGCAATGATGAATTGCTATGTGACCCTGAAGTCTA----TCA   1823
                     |..|..|...||||||.||..|.||||||||.||||    |||    |||
BPUM_0526___y   1778 AGCTTGGTGACAATGAAGAGCTTCTATGTGATCCTG----CTATTTTTCA   1823

BSNT_01037___   1824 GGATCATGAAAAAGTACAAGCTATCCATGCAGACAATGAGAAGCTCA---   1870
                     .|||||.||.||.||.|||...||.||...|||.|||||.|    ||   
BPUM_0526___y   1824 AGATCACGAGAAGGTCCAAAACATTCAAATAGAAAATGATA----CATTT   1869

BSNT_01037___   1871 -ATCAGGAGCTGGAATCTCTTTTGTCCGAATGGGAAGAACTATCCACAGA   1919
                      ||||.|||||.|||||.|||||..|.||.||||||||.||||||     
BPUM_0526___y   1870 CATCAAGAGCTCGAATCCCTTTTCGCAGAGTGGGAAGAGCTATCC-----   1914

BSNT_01037___   1920 AGAAGATTAA   1929
                      |||..||||
BPUM_0526___y   1915 -GAATCTTAA   1923


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