Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05085 and BPUM_0549
See
Amino acid alignment /
Visit
BSNT_05085 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence dna-align/BSNT_05085.1.24716.seq
# -bsequence dna-align/BPUM_0549___yopK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05085-BPUM_0549___yopK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05085-BPUM_0549___yopK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05085
# 2: BPUM_0549___yopK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1344
# Identity: 665/1344 (49.5%)
# Similarity: 665/1344 (49.5%)
# Gaps: 468/1344 (34.8%)
# Score: 1326.5
#
#
#=======================================
BSNT_05085 1 GTGAACACGGTAGCAACAAGAGACATAAGGGGACATCTAAGAG-AACTGA 49
.|||| |.||...||..||||.|..||.|||| || ||||.|
BPUM_0549___y 1 TTGAA---------ATCAGTTGATGTAAGAGATCAGCTAA-AGAAACTAA 40
BSNT_05085 50 T--AAAATCATC----GGGAGAAAAACAAATCACTGTCGCTGCTAATA-- 91
| |.|.|.||| ..|..||||..|||| |||.||.|
BPUM_0549___y 41 TCGACATTAATCCTTTAAGTCAAAATGAAAT---------TGCAAAAAAA 81
BSNT_05085 92 -TAGGGATTAGCGAGGGATACCTTAGCAAATTCTTTAATGGGA---AAGA 137
|.|||.||||....||.|||.|.||.||.||..|||||...| ||||
BPUM_0549___y 82 TTGGGGTTTAGTTCAGGTTACATAAGTAAGTTTATTAATAAAAAACAAGA 131
BSNT_05085 138 GATTAATTTTTGGATGG--TAAGAAATATTGTTC-TGTACTTGGATAGCG 184
.|||..||||||||||| ||.|| .|||.|| |.|..|||||..|||
BPUM_0549___y 132 AATTGCTTTTTGGATGGTTTATGA---GTTGATCATTTTTTTGGACTGCG 178
BSNT_05085 185 AAAATGAAACTGAGTTAATGAGAAGGTATTGTT--TAGACGGAGTAAAAA 232
|.|||||||..||.||||||| |||| .|| ||||...|.|.||||
BPUM_0549___y 179 ATAATGAAAAAGAATTAATGA-AAGG----CTTCATAGATATAATTAAAA 223
BSNT_05085 233 AGAA-GAA---TTACCCTGCTGCATTAGAATATT------------GTTA 266
.||| ||| .|| |.||||.|..||||||||| ||||
BPUM_0549___y 224 GGAATGAAAATATA-CGTGCTTCTCTAGAATATTCACATAGTAAAAGTTA 272
BSNT_05085 267 TGCTAAGAGA----------CTATT--TTC-----GGTTGTGGAAACCTT 299
| ||||| .|||| ||| .|||.| ||
BPUM_0549___y 273 T----AGAGAACTAACCGATATATTAATTCAAAGATGTTTT-------TT 311
BSNT_05085 300 GATTG---ATAGACAAATTGAAAAAGACGGA---------------AAAC 331
..||| |||.|.|.|.||||.||...||| .|||
BPUM_0549___y 312 AGTTGGCAATAAAGAGAATGAAGAATGGGGATTAATTTATCAGTGGCAAC 361
BSNT_05085 332 TCAATTC-------TTGGTCTAAAATCTAT-------AAATTTATACTTG 367
||.|.|| .||||.|| |||| |||.||| ||.
BPUM_0549___y 362 TCCAATCGAAAAGAATGGTTTA----CTATGATGAAGAAAGTTA---TTT 404
BSNT_05085 368 AAAATAGATTGTCGCTTGGAAGTTTGGAGTATACACAAAGGCTTAATG-- 415
||| ||.|||| |.|||| ||||.|
BPUM_0549___y 405 AAA----------------AAATTTG--------AAAAAG--TTAACGCC 428
BSNT_05085 416 ---AGCTTAAATCAGATTGCCATGATACGAAAACCTTACTACTT-ATCTT 461
|.|||.| ||.|.||||||..|||| ||| ||.||
BPUM_0549___y 429 AAAAACTTTA-------------GAAATGAAAACACTACT-CTTGATTTT 464
BSNT_05085 462 AGAAATGTA----CGCTAATTTTCAAAGCAGAAAGTATGAA-------CT 500
||||||||| |.|| .||||.|||..||| |||||| ||
BPUM_0549___y 465 AGAAATGTATTGTCACT-TTTTTAAAAAGAGA---TATGAATTGGCTGCT 510
BSNT_05085 501 AACTCTCGACA-------AAATCA--------AAAAAATTAAAAAGCTCA 535
.|.|.| |.|| ||||.| .|||||||.||.|.|.|.
BPUM_0549___y 511 TATTAT-GTCAGGAATATAAATGACTTAATATTAAAAATTCAAGATCCCT 559
BSNT_05085 536 TCAGTAGAATATCTGATCCGTTTTTAAAATTAG-CGTTCTCTGCTCGTTT 584
|||.|||||.||| .||||||..||| | |
BPUM_0549___y 560 TCATTAGAAAATC--------ATTTAAATGTAGAC--------------T 587
BSNT_05085 585 AGAAGAGGTTTCT-GTGAAT--ATATATTTAAAGCAAGATAACGCTGTGT 631
|.|.|||| || |||.|| ||.||.||.||..||||||||| .|.|
BPUM_0549___y 588 AAATGAGG---CTAGTGCATACATTTACTTGAAAAAAGATAACG--ATAT 632
BSNT_05085 632 A-TAAA-GCGAG------GGAAGCTG--CTCATTCTCTTCACGAGAAAAA 671
| |||| ||.|| .|.||.|| ||.||| ||..||||
BPUM_0549___y 633 ACTAAATGCAAGAAAAATCGCAGATGATCTAATT--------GAAGAAAA 674
BSNT_05085 672 TCT-------TAGTGTGAATTTAAATTTGACTGCACTGTACATATTAGCG 714
||| .|.| |||||| |.|||| .|||||
BPUM_0549___y 675 TCTCGGGCCCAATT----ATTTAA---TAACTG-------GATATT---- 706
BSNT_05085 715 TTGTCCTATATGAACGAGTCTTATTTTGTATCTTATGAATACTAT-AAGA 763
||||| ||.| |||||..|||.|.||| |||||.|||| |||
BPUM_0549___y 707 TTGTC-------AAAG-GTCTTTCTTTTTTTCT--TGAATCCTATGAAG- 745
BSNT_05085 764 AATGCATTAAATTACTCGACCAATTTCCAG--ACCGGATTAAAGAACTGA 811
||.|||| |..|..||.||.|..|.|
BPUM_0549___y 746 -----------------------TTGCCAGCTATTGTTTTGAAAAGGTCA 772
BSNT_05085 812 CACAAAATA--AAGAAGAAATA----GCAATCCTACA----ACGGTAC-- 849
.|.|.|.|| |||| ||||| |.|||.||||| |.|..||
BPUM_0549___y 773 TAGAGATTAGTAAGA--AAATAGGTCGTAATTCTACATTTGAAGAAACAT 820
BSNT_05085 850 ---------TGG-------GGAAA---------AGAGATTTCT----ACA 870
||| |.||| |||.|..||| ||.
BPUM_0549___y 821 GTGAACAATTGGGTTTATTGCAAATTTTTTGGGAGAAACCTCTGAACACT 870
BSNT_05085 871 GAATATCAGGTGACTACT--TTCGCTAAG-GCATTAGCAACACAGGACTC 917
|||.| ||.||.| ||...|||| ||.||||..| |.||.
BPUM_0549___y 871 GAAAA------GAATAGTTGTTTTATAAGAGCTTTAGGTA-----GCCTA 909
BSNT_05085 918 ATTAAGCTCTTATTATGAGCATGATTTCTATA---AAAG---GTATG--- 958
|..|| |.|| ||.|| |||| .||| |||| .||||
BPUM_0549___y 910 AAAAA------AATA-GATCA--ATTT-AATAGTGAAAGTAAATATGTTC 949
BSNT_05085 959 CTCTA------CTCTTTGACGGAATTAAAGAAGAGTCTGC-------AGA 995
||||| .|.|||||.|||| |||||| .|| |||
BPUM_0549___y 950 CTCTAATTCTTTTGTTTGAAGGAA--AAAGAA-----AGCAAAATAAAGA 992
BSNT_05085 996 AAAGTTATTGCTGTCTCTATC------TTTTTTCTCTCAGCAAAAAGATC 1039
||| |.||.||| ||.| ||.|||.|.|...|||||.|||
BPUM_0549___y 993 AAA---ACTGTTGT---TAGCAATGCATTATTTTTATACCCAAAAGGAT- 1035
BSNT_05085 1040 AATTTC-GATCAACCCTGCCA-------AAAATATACTTGATAAA---AT 1078
|||||| || |||| ||..||| |||.|..| ||
BPUM_0549___y 1036 AATTTCAGA--------GCCAGTATTCCAAGGTAT--TTGCTGGAGGGAT 1075
BSNT_05085 1079 TAGGATTTAATTTTAATATTTAG--------------------- 1101
|.|||.|..|.|||||||||.|.
BPUM_0549___y 1076 TGGGAGTCCAATTTAATATTAATGAAGGAGGTGAATATGTATGA 1119
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.