Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05082 and BPUM_0550

See Amino acid alignment / Visit BSNT_05082 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:45
# Commandline: needle
#    -asequence dna-align/BSNT_05082.1.24716.seq
#    -bsequence dna-align/BPUM_0550.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05082-BPUM_0550.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05082-BPUM_0550.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05082
# 2: BPUM_0550
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity:     238/468 (50.9%)
# Similarity:   238/468 (50.9%)
# Gaps:         150/468 (32.1%)
# Score: 501.0
# 
#
#=======================================

BSNT_05082         1 ATGGA-AAGTAAGAAAATTGGACATGCCGTTAAACGT-------CTGAGA     42
                     .|||| ||.|.||    |.|||||       |||..|       ||.|||
BPUM_0550          1 GTGGATAACTTAG----TCGGACA-------AAAAATAAAGAAACTAAGA     39

BSNT_05082        43 ACCGAAAAGAAAAAG---AC---------TGTGGATGAGGCAGCTAAGGA     80
                     |   ||.|.||||||   ||         |||.|..||           |
BPUM_0550         40 A---AACAAAAAAAGTATACTCAAAAATATGTTGCCGA-----------A     75

BSNT_05082        81 AA--TCGGAATTTCTCAGAGTTATTTATCAAGAATAGAAA----ACAA-T    123
                     ||  |.||.|||.|..|.|||||||||||.|.|.|.||||    |||| .
BPUM_0550         76 AATTTAGGTATTACAGACAGTTATTTATCTAAACTTGAAAAAGGACAACC    125

BSNT_05082       124 AC--TCAAGTGCCTTCGTTGAAGGTTATTGAGAAAATTGCTGATTACTTT    171
                     ||  ||||.|.|.||..|..||          |||||.|||||.|..|||
BPUM_0550        126 ACCTTCAATTACATTACTCAAA----------AAAATGGCTGACTTTTTT    165

BSNT_05082       172 AATGTTCATAAATCATATTTATTTTT---TGATGAAGAAAGCTTGGATAG    218
                     .||||..||.||||.|||||.|||.|   .|||||.|||   ||..|.|.
BPUM_0550        166 GATGTAGATCAATCTTATTTCTTTATCAAGGATGATGAA---TTAAAAAA    212

BSNT_05082       219 CTTTACTGACCCGGA--GAAAAA-----GTTACTCGCACAAAAAAGCATT    261
                     .||.|.|||    ||  ||||||     |.||.|||    ||||||..||
BPUM_0550        213 TTTCAATGA----GACCGAAAAAGAACTGATATTCG----AAAAAGATTT    254

BSNT_05082       262 A-CAGTCGACGATCTAAAA---AAACTCAATATAGTGCACGAGAACGGTA    307
                     | ||.|.||..|..|||||   |||.|||||||..|       ||..|||
BPUM_0550        255 ATCATTAGAAAACATAAAAAACAAATTCAATATCTT-------AAAAGTA    297

BSNT_05082       308 G-----CA--AAATAACAGAAGAAGAGTTACAAATAGTGATTCAACACTT    350
                     |     ||  ||||..|.||.||.||   ||         ||.|||.|.|
BPUM_0550        298 GATGATCAAGAAATTTCTGATGATGA---AC---------TTAAACTCAT    335

BSNT_05082       351 G---AAAGAGTTAAGGAAATTAAAG-------------GAAAGTTATATG    384
                     |   .|||..|||        ||||             ||||        
BPUM_0550        336 GCTCGAAGTCTTA--------AAAGCCTATCGGGTTTCGAAA--------    369

BSNT_05082       385 AACGATAAGGA--CTAA-    399
                     ||.||||..||  ||.| 
BPUM_0550        370 AATGATATTGATTCTTAG    387


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