Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01977 and BPUM_1116
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_01977___yjcF.1.24716.seq
# -bsequence dna-align/BPUM_1116___yjcF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01977___yjcF-BPUM_1116___yjcF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01977___yjcF-BPUM_1116___yjcF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01977___yjcF
# 2: BPUM_1116___yjcF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 485
# Identity: 284/485 (58.6%)
# Similarity: 284/485 (58.6%)
# Gaps: 112/485 (23.1%)
# Score: 717.5
#
#
#=======================================
BSNT_01977___ 1 TTGAAAGCAGTTATCGCAAAAAATGAAGAACAACTGA-AAGATGCATTCT 49
||||||.||||.|||||||.|....||..||||| || |||||||||..|
BPUM_1116___y 1 TTGAAAACAGTCATCGCAACAGCACAAACACAAC-GAGAAGATGCATATT 49
BSNT_01977___ 50 ATGTAAGAGAAGAAGTCTTTGTCAAAGAACAAAACGTGCC-TGCTGAAGA 98
|.||..||.|||||||.||.||||||||||||.|.||.|| | |..|||
BPUM_1116___y 50 ACGTTCGAAAAGAAGTATTCGTCAAAGAACAAGAAGTCCCAT--TAGAGA 97
BSNT_01977___ 99 -AGAAATTGACGAACTTGAAAATGAGTCAGAGCATATCGTCGTGTATGAC 147
.|||||.||.|||.|.|||.|.|||.|....|||.|.|||.|.|||.|.
BPUM_1116___y 98 TTGAAATAGATGAATTAGAAGACGAGGCTATTCATTTTGTCATTTATAAT 147
BSNT_01977___ 148 GGTGAA---AAGCCTGTCGGTGCCGGAAGATGGCGCA----TGAAGGACG 190
|.|||| ||||||...|..||||..||||.|||.| ||||||||
BPUM_1116___y 148 GATGAAATGAAGCCTCAAGCAGCCGCTAGATTGCGGATCATTGAAGGAC- 196
BSNT_01977___ 191 GCTACGGC-AAGTTAGAGCGGATTTGCGTACTGAAA-AGCCAC-CGCTCA 237
|.|.||| |||.||||.||.|||||.||..|.||| ||.||| |||
BPUM_1116___y 197 -CAAAGGCAAAGCTAGAACGAATTTGTGTGTTAAAAGAGGCACGCGC--- 242
BSNT_01977___ 238 GCCGGTGTCGGC---GGCATCAT----TATGA-AAGCGCTCGAAA---AA 276
|.||||| ||| ||| |||.| |||||||.|||| ||
BPUM_1116___y 243 -----TTTCGGCCTTGGC--CATAAACTATTAGAAGCGCTAGAAACAGAA 285
BSNT_01977___ 277 GCC---GCG------GCAGACGGAGGCGCTTCCGGTTTCATTTTAAACGC 317
||| ||| || ||.|||.||| .||.|..||||
BPUM_1116___y 286 GCCATTGCGAATGGAGC-GAAGGAAGCG-----------GTTATGCACGC 323
BSNT_01977___ 318 GCAAACACAGGCTGTGCCGTTTTAC---AAGAAACACGGGTATCGCGTGC 364
.|||...||.||..|.||.||.||| |||||| ||| |.|
BPUM_1116___y 324 ACAAGTCCAAGCCCTTCCTTTCTACGAAAAGAAA----GGT------TAC 363
BSNT_01977___ 365 -------TTTCTGAA------AAAGAATACCTCGATGCCGGCATTCCGCA 401
|||||||| .||||| ||.||.|| |.||
BPUM_1116___y 364 AAAGCCATTTCTGAACCGTTTGAAGAA---------GCAGGAAT--CACA 402
BSNT_01977___ 402 C-TTACAAATGATG----AAGGACTGA-------- 423
| |..|||| ||| ||..||||.
BPUM_1116___y 403 CATGTCAAA--ATGACAAAAACACTGTCTGTTTGA 435
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