Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02428 and BPUM_1354

See Amino acid alignment / Visit BSNT_02428 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_02428.1.24716.seq
#    -bsequence dna-align/BPUM_1354___ykyA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02428-BPUM_1354___ykyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02428-BPUM_1354___ykyA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02428
# 2: BPUM_1354___ykyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 733
# Identity:     285/733 (38.9%)
# Similarity:   285/733 (38.9%)
# Gaps:         365/733 (49.8%)
# Score: 715.5
# 
#
#=======================================

BSNT_02428         0 --------------------------------------------------      0
                                                                       
BPUM_1354___y      1 ATGAAACAAATAAGAAGAAGCATGAAAGCAGGTGCTGCTTTAGCGGGGAT     50

BSNT_02428         0 --------------------------------------------------      0
                                                                       
BPUM_1354___y     51 ATGTACCCTTTTGCTGACGGGATGCGGTGGTCAAAGTTCGTTTCATGACA    100

BSNT_02428         0 --------------------------------------------------      0
                                                                       
BPUM_1354___y    101 TGCAAGAGGCAATGACGAAAATGAGCGAAAAAGAGGCATCCTTTGAAAAA    150

BSNT_02428         0 --------------------------------------------------      0
                                                                       
BPUM_1354___y    151 GAGCAAGGTACACTGCAAAGCTATGAGAAAAAAGAGCAACAGCTCTATAA    200

BSNT_02428         1 -------------------------------------TTGT--TGCTTTA     11
                                                          .|||  .||.|| 
BPUM_1354___y    201 AAAAATGATTCAAACCACAAAGAATCACACAAAAACAGTGTCAAGCCTT-    249

BSNT_02428        12 TCTAATTAAGGCGCTTGAAAATGTCAGC-AAGCGCGAAGAACACCT-AAA     59
                     |||.| |.|||||||.|.|..|| |||| ||..|.||||||||..| |||
BPUM_1354___y    250 TCTGA-TCAGGCGCTAGCATCTG-CAGCGAAAAGAGAAGAACATTTGAAA    297

BSNT_02428        60 GCTTGAAAATGACAGCATGAAAAAATCGGAAACAGAATTTGAGGAAGCAA    109
                     .| .|||||.|||||||||.|..|||||.|||.||||||         .|
BPUM_1354___y    298 AC-AGAAAAAGACAGCATGGATGAATCGAAAAAAGAATT---------GA    337

BSNT_02428       110 AAACG---------TCAGCGGAACATATTAAGGAAAAAGACATAAAAGAA    150
                     |||||         ||.|||||||.|||..|.||.|..||..||||||||
BPUM_1354___y    338 AAACGGTCAAAGAATCTGCGGAACGTATACAAGATACGGATTTAAAAGAA    387

BSNT_02428       151 AAGGCCGATGCCGCAGCAAAC---CATA----TGGAGAAAAGATATACAT    193
                     ||.||.||||       ||||   ||.|    |.||||||||||||.|||
BPUM_1354___y    388 AAAGCAGATG-------AAACGGTCAAATCGCTTGAGAAAAGATATGCAT    430

BSNT_02428       194 CATATGGCACTA--TGTATAAAGAGTATAAAAAAGCACTTGAGCTTAATA    241
                     |.||||  ||.|  |.||.||.||.|||.|||||||      |||.||..
BPUM_1354___y    431 CGTATG--ACCAGCTTTACAAGGAATATCAAAAAGC------GCTGAAAC    472

BSNT_02428       242 AAAAAC----TGTATATGCAGC-TGAAAGACAAAGATTTGAC--------    278
                     ||.|.|    |.|||||..|.| |.|||||..|||    |||        
BPUM_1354___y    473 AAGATCAGCATTTATATCAATCTTTAAAGAAGAAG----GACTTAGGATA    518

BSNT_02428       279 --AAGAG--ATGATCTGGATCA----GCAGATCGATAAAGTCAATGCTTC    320
                       |||||  |..|||     ||    |.||| ||     ||.||...|||
BPUM_1354___y    519 TAAAGAGCTAAAATC-----CAAACTGAAGA-CG-----GTGAACCGTTC    557

BSNT_02428       321 TTAT----------GAAAAGATCCTTAAATATAGCGGAGAATTTAATGAA    360
                     ||||          |||||||...|.|||          |.||||||.||
BPUM_1354___y    558 TTATAGCAAAGTCAGAAAAGAAGGTAAAA----------AGTTTAATCAA    597

BSNT_02428       361 CAAACCGAAA-------AAT-ATAATAAAGCCCGGGAAGATTTATATGAT    402
                     .|.||  |||       ||| |..|||||      .|.|.|||.|.|.|.
BPUM_1354___y    598 TATAC--AAAGCAATTGAATGAGCATAAA------CAGGCTTTGTCTAAA    639

BSNT_02428       403 GCTGCAGGCTATC--GTGT-GAAAAAGAGCTGA    432
                     ||.||||   |||  |.|| |||||||||||||
BPUM_1354___y    640 GCGGCAG---ATCAAGAGTCGAAAAAGAGCTGA    669


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