Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02684 and BPUM_1547

See Amino acid alignment / Visit BSNT_02684 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_02684___ylxL.1.24716.seq
#    -bsequence dna-align/BPUM_1547___ylxL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02684___ylxL-BPUM_1547___ylxL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02684___ylxL-BPUM_1547___ylxL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02684___ylxL
# 2: BPUM_1547___ylxL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 630
# Identity:     330/630 (52.4%)
# Similarity:   330/630 (52.4%)
# Gaps:         207/630 (32.9%)
# Score: 871.0
# 
#
#=======================================

BSNT_02684___      1 GTGAAAAACATGTCAACACTATTATGGCTTTTAAGCTTTACGCTCCACGG     50
                              |||         ||||||||..|.|||||.|.|||.||.|.
BPUM_1547___y      1 ---------ATG---------TTATGGCTGATTAGCTTCATGCTTCATGC     32

BSNT_02684___     51 CGTTCTTCTGTACGCTGTCATTATCCTGTATACGAG-----GCTCGCTGC     95
                     .|..|||.|.||...|||.||.||..|.||||||||     ..||||||.
BPUM_1547___y     33 TGCACTTATTTATTTTGTGATCATTTTATATACGAGAATGAATTCGCTGA     82

BSNT_02684___     96 AGTGAAAGAAACAGAAAAACAGCAAAAACAGATACTTGAAGAGACGGAAA    145
                     ||..||...|||  ||||.||||.|.|||   |.||.|||||.|||||||
BPUM_1547___y     83 AGGCAACTGAAC--AAAAGCAGCGAGAAC---TTCTAGAAGAAACGGAAA    127

BSNT_02684___    146 ACACCTTGGCGGCATTTCTGCTTGAATTAAAAGAAGAAAATGAGAAACTG    195
                     |.|||.||||.||||||.||.|.|||.|.||||||||.|||||.||||| 
BPUM_1547___y    128 ATACCCTGGCTGCATTTTTGATGGAAGTCAAAGAAGAGAATGACAAACT-    176

BSNT_02684___    196 ATAGAAAATAAA-----------GCTTC---------ATCTGC--AAGTC    223
                            ||.||           |||||         .|||||  |||  
BPUM_1547___y    177 -------ATCAAAAGTGGCAGCCGCTTCCCCTGATTTTTCTGCTGAAG--    217

BSNT_02684___    224 AATCAGATGAAGAATC-------------CCAAA--AGTCAGGCCTTCAG    258
                         ||.|||  ||||             |||||  ||.||      ||.
BPUM_1547___y    218 ----AGCTGA--AATCGGATTTTCAGACACCAAAGCAGCCA------CAA    255

BSNT_02684___    259 ACCTC---TGAAACATATCAAGAGCGG-----------GATCCAGTCCAA    294
                     ||..|   ||||.|..|.||  |.|||           ||||||||.|  
BPUM_1547___y    256 ACACCAATTGAATCCCAGCA--ATCGGTAGAAAGTGAAGATCCAGTAC--    301

BSNT_02684___    295 GAGGCAGAGAATCT--TCCTGAACATATTGAAGGTCTGATTACAGAGGTT    342
                         |||||.| ||  ||             ||.|||..|||..||.|||
BPUM_1547___y    302 ----CAGAGCA-CTTGTC-------------AGCTCTCCTTAGCGAAGTT    333

BSNT_02684___    343 GACCGT-CGGGAAGAGCTCGTAAAC-------------------------    366
                     || .|| |.|||||||...||||||                         
BPUM_1547___y    334 GA-AGTGCAGGAAGAGAAGGTAAACGAACCCGTTCCACATCTTGAATCAG    382

BSNT_02684___    367 --------------------AGTGAGGTCCAAT--------CATTTGAAG    388
                                         |||||     |||        ||||.||.|
BPUM_1547___y    383 AAGCTTCTGTGCCTTCTGAAAGTGA-----AATAGAAGAAACATTCGAGG    427

BSNT_02684___    389 ACCAGGTCATAGA-ATTATATGA-ACAGGGATATTCGGC---AAGTCAAA    433
                     |.|||||.| ||| .|||||||| |.|||| .|||| ||   |||  |||
BPUM_1547___y    428 ATCAGGTGA-AGACCTTATATGACAAAGGG-CATTC-GCTAGAAG--AAA    472

BSNT_02684___    434 TTGCCCAGAAAATGAAGAGCGGAAAGACAGAAATCGAGCTATTTTTAAAA    483
                     |.||..|..||.||||.|..||.|||||||||||||||||.||.||||||
BPUM_1547___y    473 TAGCGAAAGAACTGAAAACGGGCAAGACAGAAATCGAGCTTTTATTAAAA    522

BSNT_02684___    484 TTTCGCTCCAAAGGTGTAAAGGATTCTTGA    513
                     |||.|| ..||||.|||||           
BPUM_1547___y    523 TTTAGC-GGAAAGCTGTAA-----------    540


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